RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA999747", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA999747 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11183905 11183905 PRJNA999747_S_NODE_4389_length_152_cov_3.148760_g4357_i0 PRJNA999747 4389 152 3.14876 4.7861152 Thalassionema nitzschioides 33649 SAR_Eukaryotes SAR_Eukaryotes 132 1.5500000000000002e-26   NTclustered gi|2192940221|ref|NC_060859.1| 33649 g4357 i0 86.179 49.75 123 15 80 2 1 122 60792 60671 Thalassionema nitzschioides strain CNS00894 chloroplast, complete genome blastn 7562 132 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Thalassionemales Thalassionemataceae Thalassionema Thalassionema nitzschioides
19125492 19125492 PRJNA999747_S_NODE_2075_length_211_cov_12.727778_g2043_i0 PRJNA999747 2075 211 12.727778 26.85561158 Pseudo-nitzschia 41953 SAR_Eukaryotes SAR_Eukaryotes 158 3.8199999999999997e-34   NTclustered gi|2852238151|gb|PQ498356.1| 44446 g2043 i0 83.146 56.8056872037915 178 25 82 4 11 184 36725 36549 Pseudo-nitzschia americana isolate CNS00138 mitochondrion, complete genome blastn 11986 158 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia americana
31796315 31796315 PRJNA999747_S_NODE_4037_length_158_cov_1.503937_g4005_i0 PRJNA999747 4037 158 1.503937 2.37622046 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 46.6 5.11e-4   NR KAL3907318.1 3061772 g4005 i0 52.3 0.835443037974684 44 20 81.6 1 141 13 70 113 KAL3907318.1 MAG: hypothetical protein SGILL_008924, partial [Bacillariaceae sp.] diamond 132 46.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;