RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA998413" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA998413 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8632272 8632272 PRJNA998413_S_NODE_5687_length_264_cov_1.333333_g5656_i0 PRJNA998413 5687 264 1.333333 3.51999912 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912991694|dbj|AP039596.1| 145626 g5656 i0 100 0.113636363636364 30 0 11 0 57 86 72646791 72646820 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 15, sequence blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
17557038 17557038 PRJNA998413_S_NODE_4554_length_282_cov_1.223744_g4523_i0 PRJNA998413 4554 282 1.223744 3.45095808 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2912991694|dbj|AP039596.1| 145626 g4523 i0 94.286 0.124113475177305 35 0 12 2 147 181 62396732 62396764 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 15, sequence blastn 35 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
20105781 20105781 PRJNA998413_S_NODE_9256_length_228_cov_1.218182_g9225_i0 PRJNA998413 9256 228 1.218182 2.77745496 Saccostrea echinata 191078 Mollusca Mollusca 56.5 0.002   NTclustered gi|2628544194|ref|XM_061336989.1| 191078 g9225 i0 97.059 0.894736842105263 34 0 14 1 16 48 3306 3273 PREDICTED: Saccostrea echinata dedicator of cytokinesis protein 1-like (LOC133201196), transcript variant X5, mRNA blastn 204 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
31416961 31416961 PRJNA998413_S_NODE_4816_length_277_cov_2.976636_g4785_i0 PRJNA998413 4816 277 2.976636 8.24528172 Mytilus edulis 6550 Mollusca Mollusca 56.6 5.94e-7   NR CAG2187267.1 6550 g4785 i0 42.9 0.682310469314079 63 35 67.1 1 45 230 192 254 CAG2187267.1 unnamed protein product [Mytilus edulis] diamond 189 56.6 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;