RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA998413" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA998413 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11477752 11477752 PRJNA998413_S_NODE_5969_length_260_cov_1.893401_g5938_i0 PRJNA998413 5969 260 1.893401 4.9228426 Eukaryota 2759 Plants Plants 147 1.06e-30   NTclustered gi|9438168|gb|AF277652.1| 50044 g5938 i0 96.667 35.2 90 0 34 3 172 260 1892 1805 Ascochloris multinucleata strain UTEX 2013 28S ribosomal RNA gene, partial sequence blastn 9152 148 0.993243243243243 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Neochloridaceae Ascochloris Ascochloris multinucleata
24225604 24225604 PRJNA998413_S_NODE_7079_length_247_cov_3.739130_g7048_i0 PRJNA998413 7079 247 3.73913 9.2356511 Chlorellales 35460 Plants Plants 455 1.4600000000000002e-123   NTclustered gi|723457039|ref|NC_025540.1| 249350 g7048 i0 100 141.408906882591 246 0 99 0 1 246 3728 3973 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 34928 455 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
32340462 32340462 PRJNA998413_S_NODE_10519_length_219_cov_1.288462_g10488_i0 PRJNA998413 10519 219 1.288462 2.82173178 Viridiplantae 33090 Plants Plants 69.3 7.36e-12   NR XP_011401035.1 3075 g10488 i0 46.6 4.83561643835616 73 34 97.3 2 214 2 207 276 XP_011401035.1 NADH-cytochrome b5 reductase-like protein [Auxenochlorella protothecoides] diamond 1059 69.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;