RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA998413", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA998413 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4807159 4807159 PRJNA998413_S_NODE_6904_length_249_cov_2.521505_g6873_i0 PRJNA998413 6904 249 2.521505 6.27854745 Caryotricha minuta 1004043 SAR_Eukaryotes SAR_Eukaryotes 195 3.5399999999999996e-45   NTclustered gi|759083508|gb|KM222125.1| 1004043 g6873 i0 84.615 29.2771084337349 195 30 78 0 55 249 1076 1270 Caryotricha minuta voucher LWW07112802 large subunit ribosomal RNA gene, partial sequence blastn 7290 195 1 Eukaryota Sar   Ciliophora Spirotrichea Kiitrichida Kiitrichidae Caryotricha Caryotricha minuta
15007021 15007021 PRJNA998413_S_NODE_2692_length_330_cov_3.513109_g2661_i0 PRJNA998413 2692 330 3.513109 11.5932597 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 566 8.97e-157   NTclustered gi|512134949|gb|JX178908.1| 1295638 g2661 i0 97.576 98.4181818181818 330 8 100 0 1 330 1384 1055 Vorticella sp. 4 JG-2011 clone 8 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 32478 566 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;