RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA998413" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA998413 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3529712 3529712 PRJNA998413_S_NODE_1003_length_449_cov_3.023316_g972_i0 PRJNA998413 1003 449 3.023316 13.57468884 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 551 3.5199999999999983e-152   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g972 i0 88.864 57.8129175946548 449 48 99 2 1 448 1867429 1867876 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 25958 551 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
20105778 20105778 PRJNA998413_S_NODE_916_length_463_cov_4.112500_g885_i0 PRJNA998413 916 463 4.1125 19.040875 Phycisphaerales bacterium 2052180 Bacteria Bacteria 636 9.759999999999999e-178   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g885 i0 92.394 195.431965442765 447 32 96 2 1 446 2190851 2190406 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 90485 636 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
25205354 25205354 PRJNA998413_S_NODE_8020_length_238_cov_2.200000_g7989_i0 PRJNA998413 8020 238 2.2 5.236 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 440 3.899999999999999e-119   NTclustered gi|511202471|gb|KC994702.1| 156588 g7989 i0 100 96.0378151260504 238 0 100 0 1 238 204 441 Uncultured Verrucomicrobia bacterium clone BF 022 16S ribosomal RNA gene, partial sequence blastn 22857 440 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;