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contig_metadata

23 rows where bioproject = "PRJNA998413" and tax_clade = "Embryophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 23 ✖

bioproject 1

  • PRJNA998413 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1273982 1273982 PRJNA998413_S_NODE_5321_length_269_cov_1.951456_g5290_i0 PRJNA998413 5321 269 1.951456 5.24941664 Picea 3328 Plants Plants 333 7.8599999999999995e-87   NTclustered gi|270140160|gb|BT107112.1| 3330 g5290 i0 96.078 10.8996282527881 204 8 76 0 66 269 912 709 Picea glauca clone GQ03102_N19 mRNA sequence blastn 2932 333 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea glauca
2254351 2254351 PRJNA998413_S_NODE_12622_length_211_cov_0.972973_g12591_i0 PRJNA998413 12622 211 0.972973 2.05297303 Morus nigra 85232 Plants Plants 385 1.61e-102   NTclustered gi|19919673|gb|AF479232.1| 85232 g12591 i0 99.526 135.625592417062 211 1 100 0 1 211 45 255 Morus nigra 26S ribosomal RNA gene, partial sequence blastn 28617 385 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Moraceae Morus Morus nigra
3529769 3529769 PRJNA998413_S_NODE_15143_length_173_cov_5.018182_g15112_i0 PRJNA998413 15143 173 5.018182 8.68145486 Lolium rigidum 89674 Plants Plants 65.8 1.87e-6   NTclustered gi|2212524801|ref|XR_006987231.1| 89674 g15112 i0 100 21.1445086705202 35 0 20 0 1 35 3096 3130 PREDICTED: Lolium rigidum 28S ribosomal RNA (LOC124650820), rRNA blastn 3658 65.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium rigidum
3529822 3529822 PRJNA998413_S_NODE_5523_length_266_cov_1.980296_g5492_i0 PRJNA998413 5523 266 1.980296 5.26758736 Picea glauca 3330 Plants Plants 117 8.5e-22   NTclustered gi|270136799|gb|BT103751.1| 3330 g5492 i0 82.394 2.09774436090226 142 17 76 2 32 172 521 655 Picea glauca clone GQ02801_J01 mRNA sequence blastn 558 117 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea glauca
3529880 3529880 PRJNA998413_S_NODE_9783_length_223_cov_75.993750_g9752_i0 PRJNA998413 9783 223 75.99375 169.4660625 Picea abies 3329 Plants Plants 52.8 0.02   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g9752 i0 100 0.125560538116592 28 0 13 0 196 223 56 29 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
5102176 5102176 PRJNA998413_S_NODE_5444_length_267_cov_3.284314_g5413_i0 PRJNA998413 5444 267 3.284314 8.76911838 Picea 3328 Plants Plants 486 5.6499999999999985e-133   NTclustered gi|1189438144|emb|LT727875.1| 3333 g5413 i0 99.625 99.3220973782771 267 0 100 1 1 267 52667 52932 Picea rubens genome assembly, organelle: plastid:chloroplast blastn 26519 486 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea rubens
6082425 6082425 PRJNA998413_S_NODE_8925_length_230_cov_4.317365_g8894_i0 PRJNA998413 8925 230 4.317365 9.9299395 Phaseolus vulgaris 3885 Plants Plants 420 4.89e-113   NTclustered gi|33327293|gb|AF527446.1| 3885 g8894 i0 99.567 1.00434782608696 231 0 100 1 1 230 415 185 Phaseolus vulgaris clone PvDR-13 mRNA sequence blastn 231 420 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Phaseolus Phaseolus vulgaris
7652035 7652035 PRJNA998413_S_NODE_8606_length_233_cov_1.535294_g8575_i0 PRJNA998413 8606 233 1.535294 3.57723502 Musa 4640 Plants Plants 431 2.2899999999999996e-116   NTclustered gi|2046373213|dbj|LC610764.1| 4641 g8575 i0 100 1150.10729613734 233 0 100 0 1 233 3181 2949 Musa acuminata cv. Pei Chiao genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence blastn 267975 431 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
8632310 8632310 PRJNA998413_S_NODE_7487_length_243_cov_2.188889_g7456_i0 PRJNA998413 7487 243 2.188889 5.31900027 Populus trichocarpa 3694 Plants Plants 333 6.989999999999999e-87   NTclustered gi|2396545017|ref|XM_024584499.2| 3694 g7456 i0 92.308 8.7283950617284 234 18 96 0 1 234 2659 2426 PREDICTED: Populus trichocarpa serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform (LOC18105339), mRNA blastn 2121 333 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus trichocarpa
9907412 9907412 PRJNA998413_S_NODE_8868_length_231_cov_1.196429_g8837_i0 PRJNA998413 8868 231 1.196429 2.76375099 Triticum aestivum 4565 Plants Plants 58.4 4.44e-4   NTclustered gi|1963662117|emb|LR861820.1| 4565 g8837 i0 94.737 0.406926406926407 38 0 16 2 1 37 6 42 Triticum aestivum mRNA for NB-LRR protein (Pm1 gene), cultivar Axminster, allele Pm1a blastn 94 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
11182494 11182494 PRJNA998413_S_NODE_5669_length_264_cov_1.666667_g5638_i0 PRJNA998413 5669 264 1.666667 4.40000088 Picea abies 3329 Plants Plants 56.5 0.002   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g5638 i0 100 0.21969696969697 30 0 11 0 1 30 29 58 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 58 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
13732725 13732725 PRJNA998413_S_NODE_8551_length_233_cov_4.435294_g8520_i0 PRJNA998413 8551 233 4.435294 10.33423502 Brassica oleracea 3712 Plants Plants 52.8 0.021   NTclustered gi|1516555473|emb|LR031873.1| 3712 g8520 i0 100 0.120171673819742 28 0 12 0 110 137 33301957 33301984 Brassica oleracea HDEM genome, scaffold: C4 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica oleracea
15007020 15007020 PRJNA998413_S_NODE_2632_length_332_cov_3.394052_g2601_i0 PRJNA998413 2632 332 3.394052 11.26825264 Picea abies 3329 Plants Plants 52.8 0.031   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g2601 i0 100 0.0843373493975904 28 0 8 0 1 28 29 56 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
15007092 15007092 PRJNA998413_S_NODE_7632_length_242_cov_1.122905_g7601_i0 PRJNA998413 7632 242 1.122905 2.7174301 Oryza sativa 4530 Plants Plants 52.8 0.022   NTclustered gi|2668294540|dbj|AP027395.1| 1771142 g7601 i0 100 0.115702479338843 28 0 12 0 90 117 11083773 11083800 Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 11 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
16576583 16576583 PRJNA998413_S_NODE_10913_length_217_cov_0.870130_g10882_i0 PRJNA998413 10913 217 0.87013 1.8881821 Arachis 3817 Plants Plants 185 1.81e-42   NTclustered gi|1669391398|ref|XM_025830286.2| 3818 g10882 i0 82.11 66.6774193548387 218 37 100 2 1 217 420 204 PREDICTED: Arachis hypogaea 60S ribosomal protein L44 (LOC112786905), mRNA blastn 14469 185 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Arachis Arachis hypogaea
20105755 20105755 PRJNA998413_S_NODE_7456_length_243_cov_24.155556_g7425_i0 PRJNA998413 7456 243 24.155556 58.69800108 Ziziphus jujuba 326968 Plants Plants 52.8 0.022   NTclustered gi|2739574740|gb|CP157414.1| 326968 g7425 i0 100 0.11522633744856 28 0 12 0 39 66 17662983 17663010 Ziziphus jujuba isolate TW-2024b chromosome 12 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rhamnaceae Ziziphus Ziziphus jujuba
21381250 21381250 PRJNA998413_S_NODE_11637_length_214_cov_1.331126_g11606_i0 PRJNA998413 11637 214 1.331126 2.84860964 Cucumis melo 3656 Plants Plants 52.8 0.019   NTclustered gi|733598836|emb|LN681873.1| 3656 g11606 i0 100 0.261682242990654 28 0 13 0 15 42 3732803 3732830 Cucumis melo genomic scaffold, anchoredscaffold00027 blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
21381254 21381254 PRJNA998413_S_NODE_11737_length_214_cov_0.887417_g11706_i0 PRJNA998413 11737 214 0.887417 1.89907238 Malpighia emarginata 151847 Plants Plants 52.8 0.019   NTclustered gi|2783005953|dbj|AP035804.1| 151847 g11706 i0 100 0.130841121495327 28 0 13 0 105 132 73739914 73739887 Malpighia emarginata NRA309 DNA, chromosome 3, nearly complete sequence blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Malpighiaceae Malpighia Malpighia emarginata
21381334 21381334 PRJNA998413_S_NODE_4737_length_279_cov_0.930556_g4706_i0 PRJNA998413 4737 279 0.930556 2.59625124 Brassica oleracea 3712 Plants Plants 52.8 0.026   NTclustered gi|1516555473|emb|LR031873.1| 3712 g4706 i0 100 0.100358422939068 28 0 10 0 244 271 29453941 29453914 Brassica oleracea HDEM genome, scaffold: C4 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica oleracea
21381406 21381406 PRJNA998413_S_NODE_9277_length_228_cov_1.127273_g9246_i0 PRJNA998413 9277 228 1.127273 2.57018244 Picea abies 3329 Plants Plants 52.8 0.02   NTclustered gi|2835530398|dbj|LC777204.1| 3329 g9246 i0 100 0.245614035087719 28 0 12 0 201 228 56 29 Picea abies Pa-Kumamoto-2022 PaPbp mRNA for penicillin-binding protein, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
22656150 22656150 PRJNA998413_S_NODE_12038_length_213_cov_0.893333_g12007_i0 PRJNA998413 12038 213 0.893333 1.90279929 Camelina sativa 90675 Plants Plants 54.7 0.005   NTclustered gi|1109124791|ref|XM_010509663.2| 90675 g12007 i0 100 0.267605633802817 29 0 14 0 140 168 1384 1412 PREDICTED: Camelina sativa transcription factor bHLH70-like (LOC104784626), mRNA blastn 57 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Camelina Camelina sativa
22656188 22656188 PRJNA998413_S_NODE_2998_length_320_cov_4.544747_g2967_i0 PRJNA998413 2998 320 4.544747 14.5431904 Picea abies 3329 Plants Plants 52.8 0.03   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g2967 i0 100 0.0875 28 0 9 0 293 320 56 29 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
29779667 29779667 PRJNA998413_S_NODE_13731_length_204_cov_2.375887_g13700_i0 PRJNA998413 13731 204 2.375887 4.84680948 root 1 Root_unresolved Root_unresolved 42 0.0429   NR CAH2078562.1 13288 g13700 i0 39.1 3.08823529411765 46 28 67.6 0 34 171 105 150 CAH2078562.1 unnamed protein product [Thlaspi arvense] diamond 630 42 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Thlaspi Thlaspi arvense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;