RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA994052" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA994052 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27595348 27595348 PRJNA994052_P_NODE_68824_length_214_cov_10.879433_g67568_i0 PRJNA994052 68824 214 10.879433 23.28198662 Lentisphaeria bacterium 2053569 Bacteria Bacteria 103 1.66e-24   NR MBO4305015.1 2053569 g67568 i0 71.8 1.97663551401869 71 20 99.5 0 1 213 170 240 MBO4305015.1 NAD(P)H-quinone oxidoreductase [Lentisphaeria bacterium] diamond 423 103 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30942911 30942911 PRJNA994052_P_NODE_36594_length_266_cov_2.787565_g35348_i0 PRJNA994052 36594 266 2.787565 7.4149229 uncultured Victivallis sp. 354118 Bacteria Bacteria 67.8 3.15e-11   NR WP_294433132.1 354118 g35348 i0 60.3 0.654135338345865 58 23 65.4 0 91 264 1 58 WP_294433132.1 SDR family NAD(P)-dependent oxidoreductase [uncultured Victivallis sp.] diamond 174 67.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis uncultured Victivallis sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;