RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA994052", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

  • Viridiplantae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA994052 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23929002 23929002 PRJNA994052_P_NODE_43799_length_251_cov_89.820225_g42551_i0 PRJNA994052 43799 251 89.820225 225.44876475 Desmochloris halophila 138176 Plants Plants 300 7.36e-77   NTclustered gi|371782123|emb|HE610155.1| 138176 g42551 i0 86.842 84.9561752988048 266 18 99 2 2 250 2669 2934 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 21324 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
23929340 23929340 PRJNA994052_P_NODE_76519_length_204_cov_149.541985_g75262_i0 PRJNA994052 76519 204 149.541985 305.0656494 Prototheca wickerhamii 3111 Plants Plants 115 2.2400000000000003e-21   NTclustered gi|159031746|dbj|AB251598.1| 3111 g75262 i0 86.239 35.2598039215686 109 11 51 3 100 204 1127 1019 Prototheca wickerhamii gene for 18S rRNA, partial sequence, clone: B blastn 7193 115 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
30152639 30152639 PRJNA994052_P_NODE_74552_length_207_cov_11.708955_g73296_i0 PRJNA994052 74552 207 11.708955 24.23753685 Bryopsis sp. KO-2 3115439 Plants Plants 53.1 4.94e-6   NR GMH39601.1 3041901 g73296 i0 44.1 0.985507246376812 68 36 98.6 1 206 3 438 503 GMH39601.1 hypothetical protein BSKO_07499 [Bryopsis sp. KO-2023] diamond 204 53.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;