RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA994052", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA994052 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28579970 28579970 PRJNA994052_P_NODE_82067_length_198_cov_64.272000_g80810_i0 PRJNA994052 82067 198 64.272 127.25856 Metazoa 33208 Echinodermata other_Eukaryota 50.8 5.75e-6   NR XP_796453.1 7668 g80810 i0 69 2.56060606060606 42 13 63.6 0 196 71 81 122 XP_796453.1 60S ribosomal protein L35 [Strongylocentrotus purpuratus] diamond 507 50.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
29653045 29653045 PRJNA994052_P_NODE_18550_length_311_cov_22.033613_g17328_i0 PRJNA994052 18550 311 22.033613 68.52453643 Metazoa 33208 Echinodermata other_Eukaryota 58.5 1.53e-8   NR PIK43177.1 307972 g17328 i0 58 0.897106109324759 50 21 48.2 0 3 152 16 65 PIK43177.1 hypothetical protein BSL78_19962 [Apostichopus japonicus] diamond 279 58.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
29653046 29653046 PRJNA994052_P_NODE_19030_length_310_cov_795.409283_g17808_i0 PRJNA994052 19030 310 795.409283 2465.7687773 Metazoa 33208 Echinodermata other_Eukaryota 47.4 0.0018600000000000001   NR XP_030839460.1 7668 g17808 i0 51.1 4.01612903225806 45 22 43.5 0 296 162 79 123 XP_030839460.1 uncharacterized protein LOC115923220 [Strongylocentrotus purpuratus] diamond 1245 47.8 0.99163179916318 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;