RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA994052", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Binatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 6 ✖

tax_clade 1

  • Bacteria candidate phyla · 6 ✖

bioproject 1

  • PRJNA994052 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3526831 3526831 PRJNA994052_P_NODE_24543_length_296_cov_11.834081_g23308_i0 PRJNA994052 24543 296 11.834081 35.02887976 Pseudomonadati 3379134 Bacteria Bacteria 131 8.999999999999999e-34   NR MFI5367169.1 2838779 g23308 i0 60.9 3.89189189189189 128 19 98.3 1 293 3 176 303 MFI5367169.1 DNA repair protein RadA [Candidatus Binatia bacterium] diamond 1152 131 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
12455846 12455846 PRJNA994052_P_NODE_61670_length_223_cov_81.486667_g60414_i0 PRJNA994052 61670 223 81.486667 181.71526741 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 263 8.4e-66   NTclustered gi|2621703606|emb|OY761465.1| 2838779 g60414 i0 89.151 174.134529147982 212 22 95 1 12 223 3394370 3394160 MAG: Candidatus Binatia bacterium isolate d3e24e22-6b5b-4867-8422-75782eed2520 genome assembly, chromosome: 1 blastn 38832 263 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
20103247 20103247 PRJNA994052_P_NODE_68636_length_214_cov_27.432624_g67380_i0 PRJNA994052 68636 214 27.432624 58.70581536 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 94.7 8.89e-22   NR MCK6553501.1 2838779 g67380 i0 65.6 0.897196261682243 64 22 89.7 0 17 208 84 147 MCK6553501.1 glycosyltransferase family 2 protein [Candidatus Binatia bacterium] diamond 192 94.7 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
30311355 30311355 PRJNA994052_P_NODE_20772_length_307_cov_22.316239_g19545_i0 PRJNA994052 20772 307 22.316239 68.51085373 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 42.7 0.0321   NR MCK6557059.1 2838779 g19545 i0 63 0.263843648208469 27 10 26.4 0 151 71 112 138 MCK6557059.1 hypothetical protein [Candidatus Binatia bacterium] diamond 81 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
30753221 30753221 PRJNA994052_P_NODE_36014_length_267_cov_15.860825_g34768_i0 PRJNA994052 36014 267 15.860825 42.34840275 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 114 3.8299999999999997e-28   NR HYV32137.1 2838779 g34768 i0 83.1 1.48314606741573 65 11 73 0 263 69 296 360 HYV32137.1 IS21 family transposase [Candidatus Binatia bacterium] diamond 396 114 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
32366223 32366223 PRJNA994052_P_NODE_77659_length_203_cov_42.930769_g76402_i0 PRJNA994052 77659 203 42.930769 87.14946107 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 70.1 4.45e-14   NR MEO6025980.1 2838779 g76402 i0 68 0.738916256157635 50 13 73.9 2 159 10 20 66 MEO6025980.1 hypothetical protein [Candidatus Binatia bacterium] diamond 150 70.1 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;