RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA994052", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA994052 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20103371 20103371 PRJNA994052_P_NODE_80436_length_200_cov_32.330709_g79179_i0 PRJNA994052 80436 200 32.330709 64.661418 Thecochaos fibrillosum 2789656 Discosea other_Eukaryota 65.8 2.23e-6   NTclustered gi|1932887129|gb|MW261337.1| 2789656 g79179 i0 100 16.245 35 0 18 0 21 55 616 582 Thecochaos fibrillosum isolate Tch small subunit ribosomal RNA gene, partial sequence blastn 3249 65.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecochaos Thecochaos fibrillosum
25203009 25203009 PRJNA994052_P_NODE_81240_length_199_cov_45.031746_g79983_i0 PRJNA994052 81240 199 45.031746 89.61317454 Thecamoeba similis 242545 Discosea other_Eukaryota 187 4.54e-43   NTclustered gi|33946350|gb|AY294154.1| 242545 g79983 i0 91.304 67.427135678392 138 11 69 1 55 191 1162 1025 Thecamoeba similis actin mRNA, complete cds blastn 13418 187 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;