RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA993416" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA993416 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28453747 28453747 PRJNA993416_P_NODE_11926_length_255_cov_1.615385_g11821_i0 PRJNA993416 11926 255 1.615385 4.11923175 Pseudomonadati 3379134 Bacteria Bacteria 118 1.79e-29   NR HMQ68191.1 2053306 g11821 i0 63.1 24.6823529411765 84 31 98.8 0 3 254 138 221 HMQ68191.1 cysteine desulfurase [Ignavibacteria bacterium] diamond 6294 118 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
29142578 29142578 PRJNA993416_P_NODE_7749_length_296_cov_1.964126_g7644_i0 PRJNA993416 7749 296 1.964126 5.81381296 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 58.9 4.58e-8   NR MCP5064189.1 2026749 g7644 i0 34.7 0.962837837837838 95 43 96.3 2 290 6 15 90 MCP5064189.1 GNAT family N-acetyltransferase [Ignavibacteriota bacterium] diamond 285 58.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;