RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where bioproject = "PRJNA993416", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 24 ✖

tax_phylum 1

  • Acidobacteriota · 24 ✖

tax_kingdom 1

bioproject 1

  • PRJNA993416 · 24 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3526362 3526362 PRJNA993416_P_NODE_13163_length_249_cov_0.875000_g13058_i0 PRJNA993416 13163 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 120 3.2699999999999996e-32   NR MBX3288189.1 1978231 g13058 i0 67.1 2.97590361445783 82 27 98.8 0 248 3 52 133 MBX3288189.1 glutathione peroxidase [Acidobacteriota bacterium] diamond 741 120 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27247719 27247719 PRJNA993416_P_NODE_10723_length_267_cov_1.953608_g10618_i0 PRJNA993416 10723 267 1.953608 5.21613336 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 150 1.7299999999999996e-41   NR MBV8831644.1 2052142 g10618 i0 84.1 1.97752808988764 88 14 98.9 0 266 3 219 306 MBV8831644.1 CoA transferase [Acidobacteriaceae bacterium] diamond 528 150 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
27411874 27411874 PRJNA993416_P_NODE_15903_length_242_cov_0.911243_g15798_i0 PRJNA993416 15903 242 0.911243 2.20520806 Pseudomonadati 3379134 Bacteria Bacteria 121 5.88e-30   NR WP_015895763.1 33973 g15798 i0 73.8 18.2727272727273 80 21 99.2 0 2 241 36 115 WP_015895763.1 MULTISPECIES: thiamine pyrophosphate-binding protein [Acidobacterium] diamond 4422 121 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium  
27690294 27690294 PRJNA993416_P_NODE_4264_length_407_cov_1.353293_g4159_i0 PRJNA993416 4264 407 1.353293 5.50790251 Acidobacteriota bacterium 1978231 Bacteria Bacteria 117 3.199999999999999e-29   NR MEW5983269.1 1978231 g4159 i0 45.9 1.95331695331695 133 69 98 2 2 400 40 169 MEW5983269.1 MBL fold metallo-hydrolase [Acidobacteriota bacterium] diamond 795 117 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27847646 27847646 PRJNA993416_P_NODE_7024_length_312_cov_1.560669_g6919_i0 PRJNA993416 7024 312 1.560669 4.86928728 Acidobacteriota bacterium 1978231 Bacteria Bacteria 63.2 1.93e-10   NR PYT54585.1 1978231 g6919 i0 52.2 0.442307692307692 46 22 44.2 0 149 12 22 67 PYT54585.1 MAG: hypothetical protein DMG46_21760 [Acidobacteriota bacterium] diamond 138 63.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28074593 28074593 PRJNA993416_P_NODE_8745_length_285_cov_1.278302_g8640_i0 PRJNA993416 8745 285 1.278302 3.6431607 Bacteria 2 Bacteria Bacteria 141 1.1199999999999999e-38   NR PWT94126.1 1978231 g8640 i0 75.3 4.92631578947368 93 23 97.9 0 5 283 9 101 PWT94126.1 MAG: transaldolase, partial [Acidobacteriota bacterium] diamond 1404 141 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28226385 28226385 PRJNA993416_P_NODE_11106_length_264_cov_1.146597_g11001_i0 PRJNA993416 11106 264 1.146597 3.02701608 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 43.9 0.0195   NR HEX6178304.1 2651171 g11001 i0 48.7 0.443181818181818 39 20 44.3 0 192 76 380 418 HEX6178304.1 alkaline phosphatase family protein [Thermoanaerobaculia bacterium] diamond 117 43.9 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28226392 28226392 PRJNA993416_P_NODE_8426_length_287_cov_2.023364_g8321_i0 PRJNA993416 8426 287 2.023364 5.80705468 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 91.7 3.05e-19   NR HXH38704.1 2651171 g8321 i0 53.2 0.982578397212544 94 44 98.3 0 283 2 291 384 HXH38704.1 phospholipase D-like domain-containing protein [Thermoanaerobaculia bacterium] diamond 282 91.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28479315 28479315 PRJNA993416_P_NODE_10506_length_269_cov_1.571429_g10401_i0 PRJNA993416 10506 269 1.571429 4.22714401 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 68.2 2.72e-11   NR MEE9235328.1 2952895 g10401 i0 54 2.69888475836431 50 22 54.6 1 11 157 216 265 MEE9235328.1 sulfotransferase domain-containing protein [Candidatus Acidiferrales bacterium] diamond 726 68.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
28605563 28605563 PRJNA993416_P_NODE_7587_length_299_cov_2.380531_g7482_i0 PRJNA993416 7587 299 2.380531 7.11778769 Acidobacteriota bacterium 1978231 Bacteria Bacteria 83.2 2.21e-17   NR MCC7043187.1 1978231 g7482 i0 66 1.00334448160535 50 17 50.2 0 150 299 15 64 MCC7043187.1 DUF1684 domain-containing protein [Acidobacteriota bacterium] diamond 300 83.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28794783 28794783 PRJNA993416_P_NODE_10347_length_271_cov_1.267677_g10242_i0 PRJNA993416 10347 271 1.267677 3.43540467 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 57 5.08e-7   NR HYR28759.1 2651171 g10242 i0 44.1 0.752767527675277 68 32 70.8 3 53 244 307 372 HYR28759.1 PKD domain-containing protein [Thermoanaerobaculia bacterium] diamond 204 57 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28826349 28826349 PRJNA993416_P_NODE_11488_length_260_cov_1.395722_g11383_i0 PRJNA993416 11488 260 1.395722 3.6288772 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 43.1 0.0319   NR HUI73376.1 3069120 g11383 i0 41.9 0.496153846153846 43 25 49.6 0 111 239 285 327 HUI73376.1 glycosyltransferase [Candidatus Acidiferrum sp.] diamond 129 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
29110852 29110852 PRJNA993416_P_NODE_1468_length_698_cov_1.755200_g1371_i0 PRJNA993416 1468 698 1.7552 12.251296 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 96.3 1.55e-20   NR MBD0370316.1 2283092 g1371 i0 43 0.812320916905444 100 55 42.1 1 432 139 95 194 MBD0370316.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 567 96.3 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29142571 29142571 PRJNA993416_P_NODE_15529_length_243_cov_0.905882_g15424_i0 PRJNA993416 15529 243 0.905882 2.20129326 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 72.4 5.01e-13   NR HEX8411575.1 2651171 g15424 i0 45.8 1.77777777777778 72 39 88.9 0 227 12 3 74 HEX8411575.1 thymidylate synthase [Thermoanaerobaculia bacterium] diamond 432 72.4 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
29205662 29205662 PRJNA993416_P_NODE_11569_length_259_cov_1.564516_g11464_i0 PRJNA993416 11569 259 1.564516 4.05209644 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 79 8.18e-15   NR HTS76659.1 2212468 g11464 i0 61.2 2.45559845559846 49 19 56.8 0 1 147 534 582 HTS76659.1 lipase maturation factor family protein [Bryobacteraceae bacterium] diamond 636 79 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29779654 29779654 PRJNA993416_P_NODE_1231_length_750_cov_3.308715_g1136_i0 PRJNA993416 1231 750 3.308715 24.8153625 Paludibaculum 1649475 Bacteria Bacteria 63.9 4.89e-8   NR WP_267239330.1 1473598 g1136 i0 47.8 1.904 69 36 27.6 0 540 746 13 81 WP_267239330.1 sigma-70 family RNA polymerase sigma factor [Paludibaculum fermentans] diamond 1428 63.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
30632515 30632515 PRJNA993416_P_NODE_4453_length_397_cov_1.604938_g4348_i0 PRJNA993416 4453 397 1.604938 6.37160386 Pseudomonadati 3379134 Bacteria Bacteria 69.3 1.09e-10   NR HEY6329107.1 2052146 g4348 i0 41.2 2.03274559193955 136 66 92.2 5 2 367 800 935 HEY6329107.1 glycosyltransferase [Blastocatellia bacterium] diamond 807 69.7 0.994261119081779 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
30784768 30784768 PRJNA993416_P_NODE_13514_length_248_cov_0.880000_g13409_i0 PRJNA993416 13514 248 0.88 2.1824 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 137 2.2e-37   NR MFP5288964.1 2651171 g13409 i0 92.7 0.991935483870968 82 6 99.2 0 246 1 55 136 MFP5288964.1 collagen binding domain-containing protein [Thermoanaerobaculia bacterium] diamond 246 137 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
31321959 31321959 PRJNA993416_P_NODE_7295_length_306_cov_2.287554_g7190_i0 PRJNA993416 7295 306 2.287554 6.99991524 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 99.8 2.08e-24   NR HZT58036.1 2283092 g7190 i0 47.8 1.80392156862745 92 48 90.2 0 27 302 1 92 HZT58036.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 552 99.8 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
31517820 31517820 PRJNA993416_P_NODE_4256_length_407_cov_2.269461_g4151_i0 PRJNA993416 4256 407 2.269461 9.2367062700000009 Pseudomonadati 3379134 Bacteria Bacteria 99 3.87e-22   NR MYF77635.1 1978231 g4151 i0 50 1.97542997542998 96 46 69.3 1 125 406 11 106 MYF77635.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Acidobacteriota bacterium] diamond 804 100 0.99 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31575241 31575241 PRJNA993416_P_NODE_10856_length_266_cov_1.595855_g10751_i0 PRJNA993416 10856 266 1.595855 4.2449743 Acidobacteriota bacterium 1978231 Bacteria Bacteria 51.2 4.84e-5   NR MCB1055898.1 1978231 g10751 i0 74.3 0.394736842105263 35 9 39.5 0 150 46 244 278 MCB1055898.1 NAD(P)/FAD-dependent oxidoreductase [Acidobacteriota bacterium] diamond 105 51.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31859609 31859609 PRJNA993416_P_NODE_8757_length_285_cov_1.165094_g8652_i0 PRJNA993416 8757 285 1.165094 3.3205179 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 44.3 0.0166   NR HEV2199939.1 2212468 g8652 i0 40.3 0.757894736842105 72 40 73.7 2 224 15 39 109 HEV2199939.1 alanine--glyoxylate aminotransferase family protein [Bryobacteraceae bacterium] diamond 216 44.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32245632 32245632 PRJNA993416_P_NODE_10418_length_270_cov_1.472081_g10313_i0 PRJNA993416 10418 270 1.472081 3.9746187 Bacteria 2 Bacteria Bacteria 110 5.51e-26   NR MDT5270757.1 1978231 g10313 i0 63.9 8.38888888888889 83 30 92.2 0 2 250 65 147 MDT5270757.1 hypothetical protein [Acidobacteriota bacterium] diamond 2265 110 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32744917 32744917 PRJNA993416_P_NODE_4500_length_395_cov_1.580745_g4395_i0 PRJNA993416 4500 395 1.580745 6.24394275 Acidobacteriota bacterium 1978231 Bacteria Bacteria 107 7.66e-25   NR MEW6368887.1 1978231 g4395 i0 47.9 0.888607594936709 117 60 88.9 1 357 7 1 116 MEW6368887.1 hypothetical protein [Acidobacteriota bacterium] diamond 351 107 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;