RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA993416", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA993416 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4803740 4803740 PRJNA993416_P_NODE_15124_length_244_cov_0.900585_g15019_i0 PRJNA993416 15124 244 0.900585 2.1974274 Caenorhabditis elegans 6239 Nematoda Nematoda 451 1.86e-122   NTclustered gi|1831513325|ref|NM_001380321.1| 6239 g15019 i0 100 7.32377049180328 244 0 100 0 1 244 267 24 Caenorhabditis elegans Phosphate transporter (pitr-1), partial mRNA blastn 1787 451 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11179383 11179383 PRJNA993416_P_NODE_9329_length_280_cov_1.333333_g9224_i0 PRJNA993416 9329 280 1.333333 3.7333324 Caenorhabditis elegans 6239 Nematoda Nematoda 510 3.54e-140   NTclustered gi|1734327237|ref|NM_067046.4| 6239 g9224 i0 99.643 3.11428571428571 280 0 100 1 1 280 3035 2757 Caenorhabditis elegans Ribosomal protein S6 kinase beta (rsks-1), mRNA blastn 872 510 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16278683 16278683 PRJNA993416_P_NODE_15613_length_242_cov_1.822485_g15508_i0 PRJNA993416 15613 242 1.822485 4.4104137 Caenorhabditis elegans 6239 Nematoda Nematoda 448 2.3799999999999995e-121   NTclustered gi|412975849|emb|FO080163.2| 6239 g15508 i0 100 3.20661157024793 242 0 100 0 1 242 6136 6377 Caenorhabditis elegans Cosmid B0303, complete sequence blastn 776 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18827502 18827502 PRJNA993416_P_NODE_10015_length_274_cov_1.373134_g9910_i0 PRJNA993416 10015 274 1.373134 3.76238716 Caenorhabditis elegans 6239 Nematoda Nematoda 507 4.47e-139   NTclustered gi|1972299397|ref|NM_001392708.1| 6239 g9910 i0 100 3.86131386861314 274 0 100 0 1 274 354 627 Caenorhabditis elegans Mediator of RNA polymerase II transcription subunit 17 (mdt-17), mRNA blastn 1058 507 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18827609 18827609 PRJNA993416_P_NODE_15615_length_242_cov_1.822485_g15510_i0 PRJNA993416 15615 242 1.822485 4.4104137 Caenorhabditis elegans 6239 Nematoda Nematoda 448 2.3799999999999995e-121   NTclustered gi|1845969912|ref|NM_001262221.3| 6239 g15510 i0 100 4 242 0 100 0 1 242 370 129 Caenorhabditis elegans Protein zwilch homolog (zwl-1), mRNA blastn 968 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25201912 25201912 PRJNA993416_P_NODE_12540_length_251_cov_0.865169_g12435_i0 PRJNA993416 12540 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.1499999999999996e-124   NTclustered gi|687865887|emb|LK928299.1| 6239 g12435 i0 99.603 10.0398406374502 252 0 100 1 1 251 2310 2561 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000178 blastn 2520 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31992150 31992150 PRJNA993416_P_NODE_14418_length_246_cov_0.878613_g14313_i0 PRJNA993416 14418 246 0.878613 2.16138798 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 4.9e-25   NR CAD22112.1 6317 g14313 i0 69.3 365.390243902439 75 23 91.5 0 2 226 114 188 CAD22112.1 tubulin, partial [Ostertagia ostertagi] diamond 89886 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;