RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA993416", tax_clade = "FCB group" and tax_phylum = "Candidatus Latescibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA993416 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2251012 2251012 PRJNA993416_P_NODE_12622_length_251_cov_0.865169_g12517_i0 PRJNA993416 12622 251 0.865169 2.17157419 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 157 1.1e-44   NR MBI4553200.1 2053570 g12517 i0 89.2 2.97609561752988 83 9 99.2 0 3 251 280 362 MBI4553200.1 galactonate dehydratase [Candidatus Latescibacterota bacterium] diamond 747 157 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
29237140 29237140 PRJNA993416_P_NODE_7569_length_299_cov_3.225664_g7464_i0 PRJNA993416 7569 299 3.225664 9.64473536 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 57.8 3.81e-7   NR NKB66443.1 2053570 g7464 i0 51 1.8561872909699 49 23 49.2 1 150 296 390 437 NKB66443.1 hypothetical protein [Candidatus Latescibacterota bacterium] diamond 555 57.8 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
30285527 30285527 PRJNA993416_P_NODE_1152_length_769_cov_1.461207_g1060_i0 PRJNA993416 1152 769 1.461207 11.23668183 Bacteria 2 Bacteria Bacteria 159 1.6e-42   NR MBI4551090.1 2053570 g1060 i0 64.9 4.61898569570871 114 38 43.7 1 765 430 277 390 MBI4551090.1 site-specific DNA-methyltransferase [Candidatus Latescibacterota bacterium] diamond 3552 159 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;