RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA993416", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA993416 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25201968 25201968 PRJNA993416_P_NODE_15000_length_244_cov_0.900585_g14895_i0 PRJNA993416 15000 244 0.900585 2.1974274 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 374 4.1399999999999986e-99   NTclustered gi|2028829559|gb|CP072328.1| 713051 g14895 i0 94.262 2 244 14 100 0 1 244 408331 408088 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 488 374 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
27784849 27784849 PRJNA993416_P_NODE_404_length_1126_cov_2.565052_g349_i0 PRJNA993416 404 1126 2.565052 28.88248552 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 75.9 6.96e-11   NR MCA9333612.1 2026720 g349 i0 33.7 0.679396092362345 255 147 63.4 7 169 882 14 263 MCA9333612.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 765 75.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28321318 28321318 PRJNA993416_P_NODE_10086_length_273_cov_1.540000_g9981_i0 PRJNA993416 10086 273 1.54 4.2042 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 167 1.21e-50   NR RKW00507.1 1917697 g9981 i0 94.4 0.989010989010989 90 5 98.9 0 271 2 7 96 RKW00507.1 MAG: hypothetical protein D8B38_05760 [Candidatus Saccharimonas sp.] diamond 270 167 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
29969154 29969154 PRJNA993416_P_NODE_13191_length_249_cov_0.875000_g13086_i0 PRJNA993416 13191 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 154 3.14e-44   NR OYX39250.1 1970480 g13086 i0 95.1 26.6144578313253 82 4 98.8 0 248 3 136 217 OYX39250.1 MAG: alpha-L-glutamate ligase [Candidatus Saccharibacteria bacterium 32-50-10] diamond 6627 154 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-50-10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;