RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where bioproject = "PRJNA986547", tax_phylum = "Armatimonadota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 24 ✖

tax_phylum 1

  • Armatimonadota · 24 ✖

tax_kingdom 1

bioproject 1

  • PRJNA986547 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
974273 974273 PRJNA986547_P_NODE_7261_length_259_cov_3.543011_g7179_i0 PRJNA986547 7261 259 3.543011 9.17639849 Fimbriimonas sp. 1936159 Bacteria Bacteria 169 2.94e-47   NR MDH4389661.1 1936159 g7179 i0 95.3 4.92277992277992 85 4 98.5 0 257 3 131 215 MDH4389661.1 NADH-quinone oxidoreductase subunit NuoG [Fimbriimonas sp.] diamond 1275 169 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
11177626 11177626 PRJNA986547_P_NODE_7309_length_259_cov_2.059140_g7227_i0 PRJNA986547 7309 259 2.05914 5.3331726 PVC group 1783257 Bacteria Bacteria 143 1.4899999999999998e-37   NR HID06958.1 2033014 g7227 i0 76.2 6.81081081081081 84 20 97.3 0 257 6 507 590 HID06958.1 right-handed parallel beta-helix repeat-containing protein [Armatimonadota bacterium] diamond 1764 143 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
13727714 13727714 PRJNA986547_P_NODE_14071_length_228_cov_2.264516_g13989_i0 PRJNA986547 14071 228 2.264516 5.16309648 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 359 1.07e-94   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g13989 i0 95.946 41.6052631578947 222 8 97 1 6 226 1878009 1877788 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 9486 359 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
16574761 16574761 PRJNA986547_P_NODE_10093_length_246_cov_7.323699_g10011_i0 PRJNA986547 10093 246 7.323699 18.01629954 Fimbriimonas 1005038 Bacteria Bacteria 322 1.53e-83   NTclustered gi|663071213|gb|CP007139.1| 661478 g10011 i0 90.283 162.024390243902 247 22 100 2 1 246 27658 27413 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 39858 322 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
16574829 16574829 PRJNA986547_P_NODE_3673_length_295_cov_6.220721_g3591_i0 PRJNA986547 3673 295 6.220721 18.35112695 Fimbriimonas 1005038 Bacteria Bacteria 344 4.03e-90   NTclustered gi|663071213|gb|CP007139.1| 661478 g3591 i0 87.667 980.725423728814 300 32 100 3 1 295 26828 27127 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 289314 344 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
24223940 24223940 PRJNA986547_P_NODE_3999_length_290_cov_7.967742_g3917_i0 PRJNA986547 3999 290 7.967742 23.1064518 Bacteria 2 Bacteria Bacteria 499 7.98e-137   NTclustered gi|95115294|gb|DQ501336.1| 157466 g3917 i0 97.917 97.9137931034483 288 6 99 0 1 288 1044 1331 Uncultured candidate division OP10 bacterium clone ST11-34 16S ribosomal RNA gene, partial sequence blastn 28395 499 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
26620780 26620780 PRJNA986547_P_NODE_5001_length_279_cov_2.252427_g4919_i0 PRJNA986547 5001 279 2.252427 6.28427133 Fimbriimonas 1005038 Bacteria Bacteria 90.1 1.32e-19   NR MDH4387495.1 1936159 g4919 i0 85.4 1.03225806451613 48 7 51.6 0 1 144 205 252 MDH4387495.1 ABC transporter permease [Fimbriimonas sp.] diamond 288 90.1 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
27468997 27468997 PRJNA986547_P_NODE_12803_length_236_cov_4.736196_g12721_i0 PRJNA986547 12803 236 4.736196 11.17742256 Fimbriimonas sp. 1936159 Bacteria Bacteria 108 3.7100000000000005e-27   NR MDH4387502.1 1936159 g12721 i0 90 1.51271186440678 60 6 76.3 0 33 212 176 235 MDH4387502.1 SDR family NAD(P)-dependent oxidoreductase [Fimbriimonas sp.] diamond 357 108 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
27658492 27658492 PRJNA986547_P_NODE_16764_length_202_cov_5.620155_g16682_i0 PRJNA986547 16764 202 5.620155 11.3527131 Armatimonadota bacterium 2033014 Bacteria Bacteria 65.9 6.6e-11   NR MEI7575475.1 2033014 g16682 i0 87.1 0.920792079207921 31 4 46 0 198 106 211 241 MEI7575475.1 hypothetical protein [Armatimonadota bacterium] diamond 186 65.9 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27847598 27847598 PRJNA986547_P_NODE_14784_length_221_cov_6.763514_g14702_i0 PRJNA986547 14784 221 6.763514 14.94736594 Armatimonadota bacterium 2033014 Bacteria Bacteria 77 9.66e-15   NR MEI7575374.1 2033014 g14702 i0 48.5 0.895927601809955 66 34 89.6 0 23 220 115 180 MEI7575374.1 phosphotransferase [Armatimonadota bacterium] diamond 198 77 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27942570 27942570 PRJNA986547_P_NODE_12685_length_237_cov_4.018293_g12603_i0 PRJNA986547 12685 237 4.018293 9.52335441 Armatimonadota bacterium 2033014 Bacteria Bacteria 69.3 1.12e-11   NR MBS1719048.1 2033014 g12603 i0 54.4 0.860759493670886 68 31 86.1 0 223 20 146 213 MBS1719048.1 TlpA family protein disulfide reductase [Armatimonadota bacterium] diamond 204 69.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27974053 27974053 PRJNA986547_P_NODE_7045_length_261_cov_1.585106_g6963_i0 PRJNA986547 7045 261 1.585106 4.13712666 Armatimonadota bacterium 2033014 Bacteria Bacteria 97.1 5.94e-23   NR MEI7575354.1 2033014 g6963 i0 55.8 1.79310344827586 77 34 88.5 0 26 256 1 77 MEI7575354.1 hypothetical protein [Armatimonadota bacterium] diamond 468 97.1 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28100191 28100191 PRJNA986547_P_NODE_12585_length_238_cov_2.896970_g12503_i0 PRJNA986547 12585 238 2.89697 6.8947886 Fimbriimonas sp. 1936159 Bacteria Bacteria 101 4.63e-25   NR MDH4389199.1 1936159 g12503 i0 64.1 0.983193277310924 78 28 98.3 0 3 236 75 152 MDH4389199.1 RNA polymerase sigma factor [Fimbriimonas sp.] diamond 234 101 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
28416213 28416213 PRJNA986547_P_NODE_8486_length_251_cov_1.668539_g8404_i0 PRJNA986547 8486 251 1.668539 4.18803289 Armatimonadota bacterium 2033014 Bacteria Bacteria 110 9.94e-28   NR MEI7577691.1 2033014 g8404 i0 76.5 0.812749003984064 68 16 81.3 0 205 2 58 125 MEI7577691.1 ComF family protein [Armatimonadota bacterium] diamond 204 110 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28579954 28579954 PRJNA986547_P_NODE_16807_length_202_cov_4.093023_g16725_i0 PRJNA986547 16807 202 4.093023 8.26790646 Fimbriimonas 1005038 Bacteria Bacteria 73.9 2.22e-13   NR MDH4389415.1 1936159 g16725 i0 83.3 1.27722772277228 42 7 62.4 0 199 74 1163 1204 MDH4389415.1 transcription-repair coupling factor [Fimbriimonas sp.] diamond 258 74.3 0.994616419919246 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
28832359 28832359 PRJNA986547_P_NODE_9108_length_249_cov_2.488636_g9026_i0 PRJNA986547 9108 249 2.488636 6.19670364 Fimbriimonas 1005038 Bacteria Bacteria 94.7 2.06e-20   NR MDH4387941.1 1936159 g9026 i0 80.4 3.68674698795181 51 10 61.4 0 1 153 574 624 MDH4387941.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG [Fimbriimonas sp.] diamond 918 95.1 0.995793901156677 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
29110813 29110813 PRJNA986547_P_NODE_4648_length_283_cov_1.700000_g4566_i0 PRJNA986547 4648 283 1.7 4.811 Fimbriimonas sp. 1936159 Bacteria Bacteria 118 1.26e-30   NR HLO97159.1 1936159 g4566 i0 67.6 1.56890459363958 74 24 78.4 0 61 282 1 74 HLO97159.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein [Fimbriimonas sp.] diamond 444 118 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
29868536 29868536 PRJNA986547_P_NODE_6211_length_267_cov_4.876289_g6129_i0 PRJNA986547 6211 267 4.876289 13.01969163 Armatimonadota bacterium 2033014 Bacteria Bacteria 61.6 1.45e-9   NR MEI7576627.1 2033014 g6129 i0 37.1 1 89 56 100 0 1 267 2 90 MEI7576627.1 hypothetical protein [Armatimonadota bacterium] diamond 267 61.6 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30215856 30215856 PRJNA986547_P_NODE_5632_length_273_cov_1.165000_g5550_i0 PRJNA986547 5632 273 1.165 3.18045 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 59.3 6.89e-9   NR MBX3110286.1 2682144 g5550 i0 60 0.43956043956044 40 16 44 0 152 271 1 40 MBX3110286.1 iron-sulfur cluster assembly scaffold protein [Fimbriimonadaceae bacterium] diamond 120 59.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
30689849 30689849 PRJNA986547_P_NODE_10573_length_245_cov_1.587209_g10491_i0 PRJNA986547 10573 245 1.587209 3.88866205 Armatimonadota bacterium 2033014 Bacteria Bacteria 112 1.24e-26   NR MEI7577986.1 2033014 g10491 i0 68.9 1.81224489795918 74 23 90.6 0 22 243 453 526 MEI7577986.1 penicillin-binding protein 2 [Armatimonadota bacterium] diamond 444 112 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30853822 30853822 PRJNA986547_P_NODE_6734_length_263_cov_2.215789_g6652_i0 PRJNA986547 6734 263 2.215789 5.82752507 Fimbriimonas 1005038 Bacteria Bacteria 120 7.13e-30   NR MDH4389211.1 1936159 g6652 i0 75 1.56273764258555 68 17 77.6 0 259 56 24 91 MDH4389211.1 alpha-amylase family glycosyl hydrolase [Fimbriimonas sp.] diamond 411 120 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
31069308 31069308 PRJNA986547_P_NODE_8095_length_253_cov_4.822222_g8013_i0 PRJNA986547 8095 253 4.822222 12.20022166 Fimbriimonas sp. 1936159 Bacteria Bacteria 153 5.47e-41   NR MDH4387429.1 1936159 g8013 i0 94 0.99604743083004 84 5 99.6 0 253 2 578 661 MDH4387429.1 primosomal protein N' [Fimbriimonas sp.] diamond 252 153 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
31416897 31416897 PRJNA986547_P_NODE_8016_length_254_cov_2.441989_g7934_i0 PRJNA986547 8016 254 2.441989 6.20265206 Armatimonadetes bacterium Cent15-Ar3 1987502 Bacteria Bacteria 133 3.3299999999999997e-35   NR OWU65095.1 1987502 g7934 i0 76.2 0.992125984251969 84 20 99.2 0 252 1 64 147 OWU65095.1 MAG: hypothetical protein CBB60_006440 [Armatimonadetes bacterium Cent15-Ar3] diamond 252 133 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Cent15-Ar3
31480438 31480438 PRJNA986547_P_NODE_9796_length_247_cov_2.954023_g9714_i0 PRJNA986547 9796 247 2.954023 7.29643681 Armatimonadota bacterium 2033014 Bacteria Bacteria 134 1.71e-38   NR MBI3912532.1 2033014 g9714 i0 97.1 0.838056680161943 69 2 83.8 0 40 246 1 69 MBI3912532.1 RNA chaperone Hfq [Armatimonadota bacterium] diamond 207 134 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;