RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA986547" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA986547 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12453418 12453418 PRJNA986547_P_NODE_3190_length_310_cov_2.493671_g3108_i0 PRJNA986547 3190 310 2.493671 7.7303801 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 67 2.4e-10   NR CAD2098534.1 5860 g3108 i0 65.2 0.445161290322581 46 16 44.5 0 308 171 731 776 CAD2098534.1 glutamate--tRNA ligase, putative [Plasmodium vinckei] diamond 138 67 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
18826039 18826039 PRJNA986547_P_NODE_8295_length_252_cov_2.262570_g8213_i0 PRJNA986547 8295 252 2.26257 5.7016764 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 392 1.1899999999999997e-104   NTclustered gi|820695469|tpe|LN714488.1| 572307 g8213 i0 94.841 14.1349206349206 252 12 100 1 1 252 157190 156940 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 3562 392 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
26741135 26741135 PRJNA986547_P_NODE_17461_length_196_cov_9.951220_g17379_i0 PRJNA986547 17461 196 9.95122 19.5043912 Neospora caninum Liverpool 572307 SAR_Eukaryotes SAR_Eukaryotes 77.8 1.51e-16   NR XP_003884403.1 572307 g17379 i0 60 4.88265306122449 65 26 99.5 0 195 1 43 107 XP_003884403.1 hypothetical protein NCLIV_048030 [Neospora caninum Liverpool] diamond 957 77.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
31416893 31416893 PRJNA986547_P_NODE_4596_length_283_cov_10.938095_g4514_i0 PRJNA986547 4596 283 10.938095 30.95480885 Babesia microti strain RI 1133968 SAR_Eukaryotes SAR_Eukaryotes 81.3 1.32e-17   NR XP_012648836.1 1133968 g4514 i0 53 0.879858657243816 83 38 86.9 1 36 281 8 90 XP_012648836.1 small subunit ribosomal protein S25e [Babesia microti strain RI] diamond 249 81.3 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;