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contig_metadata

16 rows where bioproject = "PRJNA986547", tax_kingdom = "Orthornavirae" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 16 ✖

tax_kingdom 1

  • Orthornavirae · 16 ✖

bioproject 1

  • PRJNA986547 · 16 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
974242 974242 PRJNA986547_P_NODE_501_length_641_cov_1.399648_g421_i0 PRJNA986547 501 641 1.399648 8.97174368 Poacevirus sacchari 3431714 Viruses Viruses 976 0   NTclustered gi|393890108|gb|JN941976.1| 53954 g421 i0 94.21 28.0015600624025 639 37 99 0 1 639 555 1193 Sugarcane streak mosaic virus isolate CBS8436 HC-Pro protein gene, partial cds blastn 17949 976 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
2249445 2249445 PRJNA986547_P_NODE_2_length_6723_cov_17.231729_g1_i0 PRJNA986547 2 6723 17.231729 1158.48914067 Poacevirus sacchari 3431714 Viruses Viruses 11989 0   NTclustered gi|350643441|gb|JF488066.1| 53954 g1 i0 98.855 62.878774356686 6723 77 100 0 1 6723 3059 9781 Sugarcane streak mosaic virus isolate ID, complete genome blastn 422734 11989 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
3524751 3524751 PRJNA986547_P_NODE_3_length_6723_cov_17.098947_g1_i1 PRJNA986547 3 6723 17.098947 1149.56220681 Poacevirus sacchari 3431714 Viruses Viruses 11917 0   NTclustered gi|350643441|gb|JF488066.1| 53954 g1 i1 98.661 62.878774356686 6723 90 100 0 1 6723 9781 3059 Sugarcane streak mosaic virus isolate ID, complete genome blastn 422734 11917 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
4802140 4802140 PRJNA986547_P_NODE_4_length_3494_cov_6.276820_g1_i2 PRJNA986547 4 3494 6.27682 219.3120908 Poacevirus sacchari 3431714 Viruses Viruses 6259 0   NTclustered gi|2576869639|gb|OR259188.1| 53954 g1 i2 98.998 75.6182026330853 3494 35 100 0 1 3494 6552 3059 Sugarcane streak mosaic virus isolate YN-21, complete genome blastn 264210 6259 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
6077501 6077501 PRJNA986547_P_NODE_845_length_477_cov_1.992574_g763_i0 PRJNA986547 845 477 1.992574 9.50457798 Poacevirus sacchari 3431714 Viruses Viruses 843 0   NTclustered gi|407911837|gb|JQ975096.1| 53954 g763 i0 98.532 1 477 7 100 0 1 477 114 590 Sugarcane streak mosaic virus isolate M121 polyprotein gene, partial cds blastn 477 843 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
7351956 7351956 PRJNA986547_P_NODE_246_length_1020_cov_1.985216_g183_i0 PRJNA986547 246 1020 1.985216 20.2492032 Poacevirus sacchari 3431714 Viruses Viruses 1790 0   NTclustered gi|940784937|gb|KT257208.1| 53954 g183 i0 98.333 75.2127450980392 1020 17 100 0 1 1020 2112 3131 Sugarcane streak mosaic virus isolate GN12 clone P1P3-CL10 polyprotein gene, partial cds blastn 76717 1790 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
7352012 7352012 PRJNA986547_P_NODE_6_length_3415_cov_5.213046_g3_i0 PRJNA986547 6 3415 5.213046 178.0255209 Poacevirus sacchari 3431714 Viruses Viruses 5398 0   NTclustered gi|940785099|gb|KT257289.1| 53954 g3 i0 99.362 71.193850658858 2980 19 87 0 436 3415 1 2980 Sugarcane streak mosaic virus isolate M117 clone NIACP-CL4 polyprotein gene, partial cds blastn 243127 5398 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
8627298 8627298 PRJNA986547_P_NODE_7_length_3346_cov_6.133822_g1_i3 PRJNA986547 7 3346 6.133822 205.23768412 Poacevirus sacchari 3431714 Viruses Viruses 5963 0   NTclustered gi|2576869639|gb|OR259188.1| 53954 g1 i3 98.834 77.5026897788404 3346 39 100 0 1 3346 6123 2778 Sugarcane streak mosaic virus isolate YN-21, complete genome blastn 259324 5963 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
9902391 9902391 PRJNA986547_P_NODE_48_length_1999_cov_2.217030_g33_i0 PRJNA986547 48 1999 2.21703 44.3184297 Poacevirus sacchari 3431714 Viruses Viruses 3603 0   NTclustered gi|407911837|gb|JQ975096.1| 53954 g33 i0 99.2 53.8774387193597 1999 16 100 0 1 1999 603 2601 Sugarcane streak mosaic virus isolate M121 polyprotein gene, partial cds blastn 107701 3603 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
11177603 11177603 PRJNA986547_P_NODE_569_length_596_cov_1.250478_g489_i0 PRJNA986547 569 596 1.250478 7.45284888 Poacevirus sacchari 3431714 Viruses Viruses 1090 0   NTclustered gi|1139491843|gb|KU314372.1| 53954 g489 i0 99.664 95 596 2 100 0 1 596 289 884 Sugarcane streak mosaic virus clone M86-CL4 HC-Pro gene, partial cds blastn 56620 1090 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
12453497 12453497 PRJNA986547_P_NODE_970_length_448_cov_2.450667_g888_i0 PRJNA986547 970 448 2.450667 10.97898816 Poacevirus sacchari 3431714 Viruses Viruses 828 0   NTclustered gi|669251287|gb|KJ187047.1| 53954 g888 i0 100 66.9910714285714 448 0 100 0 1 448 877 430 Sugarcane streak mosaic virus isolate YN-YZ211, complete genome blastn 30012 828 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
16277087 16277087 PRJNA986547_P_NODE_4313_length_287_cov_1.733645_g4231_i0 PRJNA986547 4313 287 1.733645 4.97556115 Poacevirus sacchari 3431714 Viruses Viruses 514 2.82e-141   NTclustered gi|940784953|gb|KT257216.1| 53954 g4231 i0 98.955 24.0174216027875 287 3 100 0 1 287 1237 951 Sugarcane streak mosaic virus isolate M117 clone P1P3-CL3 polyprotein gene, partial cds blastn 6893 514 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
20100683 20100683 PRJNA986547_P_NODE_2036_length_334_cov_1.264368_g1954_i0 PRJNA986547 2036 334 1.264368 4.22298912 Poacevirus sacchari 3431714 Viruses Viruses 617 2.48e-172   NTclustered gi|407911791|gb|JQ975073.1| 53954 g1954 i0 100 12.9880239520958 334 0 100 0 1 334 845 512 Sugarcane streak mosaic virus isolate M61 polyprotein gene, partial cds blastn 4338 617 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
20100687 20100687 PRJNA986547_P_NODE_2276_length_321_cov_1.544355_g2194_i0 PRJNA986547 2276 321 1.544355 4.95737955 Poacevirus sacchari 3431714 Viruses Viruses 588 1.8599999999999994e-163   NTclustered gi|407911791|gb|JQ975073.1| 53954 g2194 i0 99.688 28.8878504672897 321 1 100 0 1 321 1731 1411 Sugarcane streak mosaic virus isolate M61 polyprotein gene, partial cds blastn 9273 588 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
25200392 25200392 PRJNA986547_P_NODE_260_length_970_cov_1.830546_g196_i0 PRJNA986547 260 970 1.830546 17.7562962 Poacevirus sacchari 3431714 Viruses Viruses 1336 0   NTclustered gi|940784951|gb|KT257215.1| 53954 g196 i0 97.212 84.0958762886598 789 22 81 0 3 791 2465 3253 Sugarcane streak mosaic virus isolate M117 clone P1P3-CL2 polyprotein gene, partial cds blastn 81573 1336 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari
25200410 25200410 PRJNA986547_P_NODE_420_length_715_cov_1.919003_g340_i0 PRJNA986547 420 715 1.919003 13.72087145 Poacevirus sacchari 3431714 Viruses Viruses 1282 0   NTclustered gi|350643441|gb|JF488066.1| 53954 g340 i0 99.021 89.1734265734266 715 7 100 0 1 715 1787 1073 Sugarcane streak mosaic virus isolate ID, complete genome blastn 63759 1282 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Poacevirus Poacevirus sacchari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;