RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA986547", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA986547 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7650294 7650294 PRJNA986547_P_NODE_16886_length_201_cov_5.804688_g16804_i0 PRJNA986547 16886 201 5.804688 11.66742288 Pseudomonadota 1224 Bacteria Bacteria 209 9.8e-50   NTclustered gi|2874253659|emb|OY969087.1| 34034 g16804 i0 85.93 30.955223880597 199 24 98 4 5 201 1960819 1961015 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 6222 211 0.990521327014218 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22950003 22950003 PRJNA986547_P_NODE_5158_length_277_cov_7.612745_g5076_i0 PRJNA986547 5158 277 7.612745 21.08730365 root 1 Root_unresolved Root_unresolved 510 3.5e-140   NTclustered gi|1139283245|emb|LT697265.1| 34034 g5076 i0 100 99.3610108303249 276 0 99 0 2 277 295 20 uncultured delta proteobacterium partial 16S rRNA gene, isolate 10T_22683 blastn 27523 510 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;