RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA986547", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 8 ✖

bioproject 1

  • PRJNA986547 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6077516 6077516 PRJNA986547_P_NODE_9165_length_249_cov_1.312500_g9083_i0 PRJNA986547 9165 249 1.3125 3.268125 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 5.67e-27   NR CDW55610.1 36087 g9083 i0 81.4 18.7228915662651 59 11 71.1 0 213 37 1 59 CDW55610.1 60S ribosomal protein L10 [Trichuris trichiura] diamond 4662 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
13727705 13727705 PRJNA986547_P_NODE_13371_length_232_cov_6.805031_g13289_i0 PRJNA986547 13371 232 6.805031 15.78767192 Trichinella spiralis 6334 Nematoda Nematoda 54.7 0.006   NTclustered gi|339262803|ref|XM_003367173.1| 6334 g13289 i0 88 0.939655172413793 50 1 21 4 51 99 259 214 Trichinella spiralis conserved hypothetical protein (Tsp_13564) mRNA, complete cds blastn 218 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
15002016 15002016 PRJNA986547_P_NODE_1192_length_409_cov_3.547619_g1110_i0 PRJNA986547 1192 409 3.547619 14.50976171 Pristionchus sp. 11 RS5228 452806 Nematoda Nematoda 344 5.79e-90   NTclustered gi|150984487|gb|EF634886.1| 452806 g1110 i0 85.455 82.4254278728606 330 48 81 0 16 345 387 58 Pristionchus sp. 11 RS5228 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 33712 344 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 11 RS5228
22651163 22651163 PRJNA986547_P_NODE_12318_length_240_cov_2.371257_g12236_i0 PRJNA986547 12318 240 2.371257 5.6910168 Metazoa 33208 Nematoda Nematoda 138 1.02e-35   NR KAE9413899.1 6313 g12236 i0 78.8 50 80 17 100 0 240 1 135 214 KAE9413899.1 hypothetical protein Angca_008466, partial [Angiostrongylus cantonensis] diamond 12000 138 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
23926730 23926730 PRJNA986547_P_NODE_2659_length_310_cov_5.527426_g2577_i0 PRJNA986547 2659 310 5.527426 17.1350206 Caenorhabditis briggsae 6238 Nematoda Nematoda 152 2.7799999999999996e-32   NTclustered gi|11094915|gb|AC084465.1|AC084465 6238 g2577 i0 77.5 20.8838709677419 280 46 89 7 34 310 37012 37277 Caenorhabditis briggsae cosmid CB039B01, complete sequence blastn 6474 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
24223920 24223920 PRJNA986547_P_NODE_17199_length_199_cov_4.277778_g17117_i0 PRJNA986547 17199 199 4.277778 8.51277822 Metazoa 33208 Nematoda Nematoda 222 1.24e-53   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g17117 i0 87.179 92.3115577889447 195 25 98 0 2 196 299 105 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 18370 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
26868445 26868445 PRJNA986547_P_NODE_7361_length_258_cov_8.767568_g7279_i0 PRJNA986547 7361 258 8.767568 22.62032544 Trichinella britovi 45882 Nematoda Nematoda 66.2 2.34e-10   NR KRY46612.1 45882 g7279 i0 48.6 2.58139534883721 72 37 83.7 0 257 42 619 690 KRY46612.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella britovi] diamond 666 66.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
31986133 31986133 PRJNA986547_P_NODE_9398_length_248_cov_3.857143_g9316_i0 PRJNA986547 9398 248 3.857143 9.56571464 Meloidogyne enterolobii 390850 Nematoda Nematoda 75.9 2.84e-15   NR CAD2162211.1 390850 g9316 i0 59.3 2.61290322580645 54 22 65.3 0 246 85 88 141 CAD2162211.1 unnamed protein product [Meloidogyne enterolobii] diamond 648 75.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;