RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA986547", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA986547 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28573871 28573871 PRJNA986547_P_NODE_6227_length_267_cov_3.572165_g6145_i0 PRJNA986547 6227 267 3.572165 9.53768055 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 53.1 4.14e-6   NR MBA3670533.1 2026741 g6145 i0 38.7 1.92134831460674 93 47 94.4 3 13 264 37 128 MBA3670533.1 DUF3553 domain-containing protein [Gemmatimonadaceae bacterium] diamond 513 53.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30121078 30121078 PRJNA986547_P_NODE_13892_length_229_cov_3.230769_g13810_i0 PRJNA986547 13892 229 3.230769 7.39846101 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.0307   NR HEX3157856.1 2026741 g13810 i0 39 0.77292576419214 59 31 70.7 1 165 4 209 267 HEX3157856.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 177 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31321921 31321921 PRJNA986547_P_NODE_9515_length_248_cov_1.440000_g9433_i0 PRJNA986547 9515 248 1.44 3.5712 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 48.9 2.44e-4   NR HEX6816551.1 2026741 g9433 i0 38.8 0.810483870967742 67 41 81 0 241 41 33 99 HEX6816551.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 201 48.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31954500 31954500 PRJNA986547_P_NODE_13657_length_230_cov_11.840764_g13575_i0 PRJNA986547 13657 230 11.840764 27.2337572 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 92 1.18e-22   NR HVD33131.1 2448054 g13575 i0 78.6 0.730434782608696 56 12 73 0 41 208 1 56 HVD33131.1 hypothetical protein [Gemmatimonadales bacterium] diamond 168 92 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;