RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA986547", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA986547 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3524744 3524744 PRJNA986547_P_NODE_3603_length_298_cov_1.648889_g3521_i0 PRJNA986547 3603 298 1.648889 4.91368922 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 407 5.1299999999999995e-109   NTclustered gi|62910949|gb|AY925001.1| 5778 g3521 i0 99.115 1.7214765100671101 226 2 76 0 6 231 226 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 513 407 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24223911 24223911 PRJNA986547_P_NODE_15879_length_210_cov_5.408759_g15797_i0 PRJNA986547 15879 210 5.408759 11.3583939 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 388 1.24e-103   NTclustered gi|300078496|gb|GU001158.1| 5778 g15797 i0 100 6.37142857142857 210 0 100 0 1 210 965 1174 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1338 388 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32744868 32744868 PRJNA986547_P_NODE_12260_length_240_cov_4.263473_g12178_i0 PRJNA986547 12260 240 4.263473 10.2323352 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 100 1.21e-22   NR AKT93967.1 5778 g12178 i0 70.8 0.8125 65 19 81.3 0 44 238 509 573 AKT93967.1 NADH dehydrogenase subunit 5 [Vermamoeba vermiformis] diamond 195 100 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;