contig_metadata
12 rows where bioproject = "PRJNA986481", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2248755 | 2248755 | PRJNA986481_P_NODE_33362_length_283_cov_1.457265_g32837_i0 | PRJNA986481 | 33362 | 283 | 1.457265 | 4.12405995 | Treponema putidum | 221027 | Bacteria | Bacteria | 78.7 | 4.31e-10 | NTclustered | gi|2277017610|gb|CP038804.1| | 221027 | g32837 | i0 | 92.727 | 12.4028268551237 | 55 | 3 | 19 | 1 | 148 | 201 | 805661 | 805607 | Treponema putidum strain OMZ 835 chromosome, complete genome | blastn | 3510 | 78.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema putidum | ||
| 10200835 | 10200835 | PRJNA986481_P_NODE_8388_length_562_cov_3.791423_g7879_i0 | PRJNA986481 | 8388 | 562 | 3.791423 | 21.30779726 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 101 | 3.13e-21 | NR | MCL2190931.1 | 166 | g7879 | i0 | 40 | 1.50533807829181 | 135 | 79 | 72.1 | 1 | 8 | 412 | 468 | 600 | MCL2190931.1 molecular chaperone DnaK [Treponema sp.] | diamond | 846 | 102 | 0.990196078431373 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 22651077 | 22651077 | PRJNA986481_P_NODE_63258_length_206_cov_2.165605_g62733_i0 | PRJNA986481 | 63258 | 206 | 2.165605 | 4.4611463 | Treponema saccharophilum | 165 | Bacteria | Bacteria | 93.5 | 1.06e-14 | NTclustered | gi|2581918939|dbj|AP025288.1| | 165 | g62733 | i0 | 89.189 | 7.68446601941748 | 74 | 8 | 56 | 0 | 125 | 198 | 373822 | 373749 | Treponema saccharophilum JCM 32279 DNA, complete genome | blastn | 1583 | 93.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema saccharophilum | ||
| 26804811 | 26804811 | PRJNA986481_P_NODE_46401_length_256_cov_0.975845_g45876_i0 | PRJNA986481 | 46401 | 256 | 0.975845 | 2.4981632 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 43.1 | 0.031 | NR | MCI7536061.1 | 2202144 | g45876 | i0 | 33.3 | 0.87890625 | 75 | 50 | 87.9 | 0 | 252 | 28 | 282 | 356 | MCI7536061.1 multidrug effflux MFS transporter [Spirochaetota bacterium] | diamond | 225 | 43.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 29363350 | 29363350 | PRJNA986481_P_NODE_33309_length_283_cov_1.752137_g32784_i0 | PRJNA986481 | 33309 | 283 | 1.752137 | 4.95854771 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 105 | 1.16e-26 | NR | MBK8399036.1 | 2026757 | g32784 | i0 | 59.3 | 0.964664310954064 | 91 | 37 | 96.5 | 0 | 5 | 277 | 62 | 152 | MBK8399036.1 N-acetyltransferase [Leptospiraceae bacterium] | diamond | 273 | 105 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 29811099 | 29811099 | PRJNA986481_P_NODE_52971_length_249_cov_1.010000_g52446_i0 | PRJNA986481 | 52971 | 249 | 1.01 | 2.5149 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 133 | 3.3499999999999993e-34 | NR | WP_021957761.1 | 29522 | g52446 | i0 | 74.4 | 41.2289156626506 | 82 | 21 | 98.8 | 0 | 247 | 2 | 96 | 177 | WP_021957761.1 phosphoenolpyruvate carboxykinase (GTP) [Brachyspira aalborgi] | diamond | 10266 | 134 | 0.992537313432836 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira aalborgi | ||
| 30221855 | 30221855 | PRJNA986481_P_NODE_43392_length_260_cov_0.957346_g42867_i0 | PRJNA986481 | 43392 | 260 | 0.957346 | 2.4890996 | Spirochaeta | 146 | Bacteria | Bacteria | 145 | 2.78e-38 | NR | MCA1753670.1 | 28185 | g42867 | i0 | 76.5 | 2.94230769230769 | 85 | 20 | 98.1 | 0 | 258 | 4 | 275 | 359 | MCA1753670.1 NAD-glutamate dehydrogenase [Spirochaeta sp.] | diamond | 765 | 145 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta sp. | ||
| 30468985 | 30468985 | PRJNA986481_P_NODE_35013_length_276_cov_1.696035_g34488_i0 | PRJNA986481 | 35013 | 276 | 1.696035 | 4.6810566 | Treponema sp. | 166 | Bacteria | Bacteria | 53.5 | 8.86e-6 | NR | MDA8425904.1 | 166 | g34488 | i0 | 51 | 0.554347826086957 | 51 | 25 | 55.4 | 0 | 274 | 122 | 869 | 919 | MDA8425904.1 ankyrin repeat domain-containing protein [Treponema sp.] | diamond | 153 | 53.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 30506352 | 30506352 | PRJNA986481_P_NODE_9413_length_532_cov_2.322981_g8894_i0 | PRJNA986481 | 9413 | 532 | 2.322981 | 12.35825892 | Bacteria | 2 | Bacteria | Bacteria | 173 | 4.899999999999999e-47 | NR | MBS7260511.1 | 166 | g8894 | i0 | 46.6 | 60.0958646616541 | 174 | 93 | 98.1 | 0 | 2 | 523 | 153 | 326 | MBS7260511.1 glutamine synthetase III [Treponema sp.] | diamond | 31971 | 174 | 0.994252873563218 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 31069278 | 31069278 | PRJNA986481_P_NODE_45595_length_257_cov_0.971154_g45070_i0 | PRJNA986481 | 45595 | 257 | 0.971154 | 2.49586578 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 53.1 | 9.1e-6 | NR | MCB1164785.1 | 2026757 | g45070 | i0 | 52.9 | 1.19066147859922 | 51 | 24 | 59.5 | 0 | 257 | 105 | 332 | 382 | MCB1164785.1 2-dehydropantoate 2-reductase [Leptospiraceae bacterium] | diamond | 306 | 53.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 31353622 | 31353622 | PRJNA986481_P_NODE_4516_length_737_cov_3.244186_g4099_i0 | PRJNA986481 | 4516 | 737 | 3.244186 | 23.90965082 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 58.9 | 5.68e-6 | NR | HMV43514.1 | 2026757 | g4099 | i0 | 41.8 | 0.32157394843962 | 79 | 37 | 28.5 | 2 | 601 | 392 | 399 | 477 | HMV43514.1 protein kinase [Leptospiraceae bacterium] | diamond | 237 | 58.9 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 31353623 | 31353623 | PRJNA986481_P_NODE_47276_length_255_cov_1.101942_g46751_i0 | PRJNA986481 | 47276 | 255 | 1.101942 | 2.8099521 | Treponema sp. | 166 | Bacteria | Bacteria | 43.5 | 0.022 | NR | MCL2722238.1 | 166 | g46751 | i0 | 34.8 | 1.18823529411765 | 66 | 42 | 76.5 | 1 | 205 | 11 | 3 | 68 | MCL2722238.1 MBL fold metallo-hydrolase [Treponema sp.] | diamond | 303 | 43.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;