RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA986481" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJNA986481 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1272228 1272228 PRJNA986481_P_NODE_62361_length_228_cov_2.648045_g61836_i0 PRJNA986481 62361 228 2.648045 6.0375426 Fusobacterium 848 Bacteria Bacteria 388 1.3599999999999998e-103   NTclustered gi|2704995109|gb|CP077144.1| 851 g61836 i0 97.368 99.9824561403509 228 6 100 0 1 228 1044452 1044225 Fusobacterium nucleatum strain KCOM2847 chromosome, complete genome blastn 22796 388 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
11176823 11176823 PRJNA986481_P_NODE_28069_length_309_cov_4.403846_g27544_i0 PRJNA986481 28069 309 4.403846 13.60788414 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 503 6.629999999999998e-138   NTclustered gi|1276718681|gb|CP024704.1| 2663009 g27544 i0 98.932 90.9385113268608 281 3 91 0 20 300 848561 848281 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome blastn 28100 503 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
14025933 14025933 PRJNA986481_P_NODE_2371_length_951_cov_3.586475_g2054_i0 PRJNA986481 2371 951 3.586475 34.10737725 Leptotrichia 32067 Bacteria Bacteria 1698 0   NTclustered gi|470484715|ref|NR_076664.1| 40542 g2054 i0 99.57 481.937960042061 931 4 98 0 21 951 3 933 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 458323 1698 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
16276890 16276890 PRJNA986481_P_NODE_7493_length_593_cov_1.814338_g6995_i0 PRJNA986481 7493 593 1.814338 10.75902434 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 1072 0   NTclustered gi|922689899|gb|CP012410.1| 712357 g6995 i0 99.325 1.90387858347386 593 3 100 1 1 593 1984275 1983684 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 1129 1072 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
21674556 21674556 PRJNA986481_P_NODE_60897_length_238_cov_3.777778_g60372_i0 PRJNA986481 60897 238 3.777778 8.99111164 Fusobacterium 848 Bacteria Bacteria 398 2.3799999999999995e-106   NTclustered gi|1370537877|gb|CP028108.1| 860 g60372 i0 99.541 287.373949579832 218 1 92 0 21 238 1815285 1815068 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 68395 398 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
22650377 22650377 PRJNA986481_P_NODE_19578_length_370_cov_2.084112_g19053_i0 PRJNA986481 19578 370 2.084112 7.7112144 Fusobacterium polymorphum 76857 Bacteria Bacteria 684 0   NTclustered gi|2706056059|gb|CP077188.1| 76857 g19053 i0 100 99.3162162162162 370 0 100 0 1 370 919734 920103 Fusobacterium polymorphum strain SB028 chromosome, complete genome blastn 36747 684 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
24223831 24223831 PRJNA986481_P_NODE_5679_length_670_cov_2.903382_g5228_i0 PRJNA986481 5679 670 2.903382 19.4526594 Leptotrichia 32067 Bacteria Bacteria 1194 0   NTclustered gi|470484715|ref|NR_076664.1| 40542 g5228 i0 99.392 507.729850746269 658 4 98 0 13 670 1645 988 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 340179 1199 0.995829858215179 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
29589871 29589871 PRJNA986481_P_NODE_23450_length_339_cov_1.227586_g22925_i0 PRJNA986481 23450 339 1.227586 4.16151654 Cetobacterium 180162 Bacteria Bacteria 47.4 0.00271   NR WP_297595860.1 527638 g22925 i0 78.6 6.93805309734513 28 6 24.8 0 141 58 572 599 WP_297595860.1 ATP-dependent zinc metalloprotease FtsH [uncultured Cetobacterium sp.] diamond 2352 47.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;