RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA986481", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA986481 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26646245 26646245 PRJNA986481_P_NODE_13461_length_446_cov_3.272040_g12937_i0 PRJNA986481 13461 446 3.27204 14.5932984 Lentisphaerae bacterium GWF2_57_35 1798576 Bacteria Bacteria 133 3.18e-33   NR OGV43803.1 1798576 g12937 i0 58.7 0.699551569506726 104 40 70 1 2 313 494 594 OGV43803.1 MAG: phosphoenolpyruvate carboxykinase [Lentisphaerae bacterium GWF2_57_35] diamond 312 133 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_57_35
31891271 31891271 PRJNA986481_P_NODE_42137_length_261_cov_0.952830_g41612_i0 PRJNA986481 42137 261 0.95283 2.4868863 Victivallaceae bacterium 2793042 Bacteria Bacteria 45.1 0.00715   NR MDD3886178.1 2793042 g41612 i0 41.4 0.666666666666667 58 34 66.7 0 5 178 482 539 MDD3886178.1 ATP-binding protein [Victivallaceae bacterium] diamond 174 45.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
32397672 32397672 PRJNA986481_P_NODE_16759_length_401_cov_1.005682_g16234_i0 PRJNA986481 16759 401 1.005682 4.03278482 Lentisphaeria bacterium 2053569 Bacteria Bacteria 45.1 0.0254   NR MBR2372655.1 2053569 g16234 i0 33.3 0.538653366583541 72 47 53.9 1 72 287 24 94 MBR2372655.1 deoxyribonuclease IV [Lentisphaeria bacterium] diamond 216 45.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;