RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA986481", tax_clade = "Methanomada group" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 6 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJNA986481 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2249179 2249179 PRJNA986481_P_NODE_59562_length_242_cov_1.046632_g59037_i0 PRJNA986481 59562 242 1.046632 2.53284944 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 392 1.1299999999999999e-104   NTclustered gi|985614202|gb|CP010834.1| 1609968 g59037 i0 95.868 10.9876033057851 242 10 100 0 1 242 219271 219030 Methanobrevibacter sp. YE315, complete genome blastn 2659 392 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
13727130 13727130 PRJNA986481_P_NODE_32951_length_285_cov_1.233051_g32426_i0 PRJNA986481 32951 285 1.233051 3.51419535 Methanobrevibacter sp. 66852 Archaea Archaea 152 1.99e-41   NR WP_405289692.1 66852 g32426 i0 77.7 2.96842105263158 94 20 98.9 1 284 3 26 118 WP_405289692.1 molecular chaperone DnaK, partial [Methanobrevibacter sp.] diamond 846 152 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27342660 27342660 PRJNA986481_P_NODE_10963_length_494_cov_4.656180_g10441_i0 PRJNA986481 10963 494 4.65618 23.0015292 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 228 4.49e-67   NR WP_295614768.1 253161 g10441 i0 73.6 0.874493927125506 144 38 87.4 0 3 434 677 820 WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.] diamond 432 228 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
28258027 28258027 PRJNA986481_P_NODE_56506_length_245_cov_1.030612_g55981_i0 PRJNA986481 56506 245 1.030612 2.5249994 Methanobacterium sp. 2164 Archaea Archaea 128 2.09e-33   NR TMS43079.1 2164 g55981 i0 75.9 1.93469387755102 79 19 96.7 0 238 2 21 99 TMS43079.1 MAG: DUF2117 domain-containing protein [Methanobacterium sp.] diamond 474 128 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
28794716 28794716 PRJNA986481_P_NODE_39467_length_264_cov_2.083721_g38942_i0 PRJNA986481 39467 264 2.083721 5.50102344 Methanobrevibacter sp. 66852 Archaea Archaea 48.9 1.36e-4   NR MEE3444538.1 66852 g38942 i0 46.4 0.636363636363636 56 29 62.5 1 258 94 108 163 MEE3444538.1 40S ribosomal protein S19 [Methanobrevibacter sp.] diamond 168 48.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30026538 30026538 PRJNA986481_P_NODE_40331_length_263_cov_1.345794_g39806_i0 PRJNA986481 40331 263 1.345794 3.53943822 Methanococcus voltae 2188 Archaea Archaea 48.5 4.37e-4   NR WP_013180395.1 2188 g39806 i0 42.9 1.42585551330798 63 28 69.6 2 226 44 635 691 WP_013180395.1 protease inhibitor I42 family protein [Methanococcus voltae] diamond 375 48.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus voltae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;