RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA983848" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA983848 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7345768 7345768 PRJNA983848_P_NODE_154426_length_244_cov_5.017544_g148543_i0 PRJNA983848 154426 244 5.017544 12.24280736 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 351 1.9399999999999998e-92   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g148543 i0 92.623 3.00819672131148 244 18 100 0 1 244 4037 4280 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 734 351 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
9896348 9896348 PRJNA983848_P_NODE_160608_length_242_cov_0.923077_g154725_i0 PRJNA983848 160608 242 0.923077 2.23384634 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 58.4 4.69e-4   NTclustered gi|2119447258|ref|XM_044706016.1| 5763 g154725 i0 97.059 0.785123966942149 34 1 14 0 108 141 742 709 Naegleria fowleri uncharacterized protein (FDP41_002784), partial mRNA blastn 190 58.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
9897973 9897973 PRJNA983848_P_NODE_54228_length_457_cov_38.726562_g48349_i0 PRJNA983848 54228 457 38.726562 176.98038834 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 841 0   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g48349 i0 100 33.6148796498906 455 0 99 0 3 457 483 29 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 15362 841 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
14025335 14025335 PRJNA983848_P_NODE_135451_length_255_cov_1.714286_g129568_i0 PRJNA983848 135451 255 1.714286 4.3714293 Naegleria 5761 Heterolobosea other_Eukaryota 366 7.28e-97   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g129568 i0 92.549 12 255 19 100 0 1 255 4038 4292 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 3060 366 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
25195310 25195310 PRJNA983848_P_NODE_37080_length_649_cov_21.388889_g31281_i0 PRJNA983848 37080 649 21.388889 138.81388961 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 970 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g31281 i0 93.683 6.47919876733436 649 40 100 1 1 649 2578 1931 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4205 970 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
25195688 25195688 PRJNA983848_P_NODE_47040_length_517_cov_10.536036_g41170_i0 PRJNA983848 47040 517 10.536036 54.47130612 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 894 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g41170 i0 97.876 19.3829787234043 518 10 100 1 1 517 3529 4046 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10021 894 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
28321199 28321199 PRJNA983848_P_NODE_137926_length_253_cov_0.866667_g132043_i0 PRJNA983848 137926 253 0.866667 2.19266751 Acrasis kona 1008807 Heterolobosea other_Eukaryota 102 4.859999999999999e-24   NR KAL0491067.1 1008807 g132043 i0 57.1 0.99604743083004 84 35 99.6 1 253 2 133 215 KAL0491067.1 trimeric intracellular cation channel type B [Acrasis kona] diamond 252 102 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;