RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA983848" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA983848 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27374343 27374343 PRJNA983848_P_NODE_146383_length_248_cov_3.114286_g140500_i0 PRJNA983848 146383 248 3.114286 7.72342928 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.1 0.0283   NR TVP55853.1 2448054 g140500 i0 32.9 0.883064516129032 73 39 76.2 1 39 227 384 456 TVP55853.1 MAG: sodium-dependent transporter [Gemmatimonadales bacterium] diamond 219 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27563198 27563198 PRJNA983848_P_NODE_165104_length_229_cov_2.967949_g159221_i0 PRJNA983848 165104 229 2.967949 6.79660321 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.7 0.0312   NR MDB4886191.1 2026742 g159221 i0 57.1 0.366812227074236 28 12 36.7 0 119 202 310 337 MDB4886191.1 hypothetical protein [Gemmatimonadota bacterium] diamond 84 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29969129 29969129 PRJNA983848_P_NODE_154071_length_245_cov_0.906977_g148188_i0 PRJNA983848 154071 245 0.906977 2.22209365 Pseudomonadati 3379134 Bacteria Bacteria 161 5.35e-44   NR MDQ3223623.1 2026742 g148188 i0 100 28.7387755102041 81 0 99.2 0 245 3 143 223 MDQ3223623.1 vitamin B12-dependent ribonucleotide reductase [Gemmatimonadota bacterium] diamond 7041 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31701444 31701444 PRJNA983848_P_NODE_154917_length_244_cov_1.812865_g149034_i0 PRJNA983848 154917 244 1.812865 4.4233906 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.0133   NR HEY5023104.1 2026741 g149034 i0 43.9 0.700819672131147 57 31 68.9 1 202 35 12 68 HEY5023104.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 171 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;