contig_metadata
5 rows where bioproject = "PRJNA983848", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21673892 | 21673892 | PRJNA983848_P_NODE_167657_length_200_cov_5.464567_g161774_i0 | PRJNA983848 | 167657 | 200 | 5.464567 | 10.929134 | Desulfarculus | 453229 | Bacteria | Bacteria | 326 | 9.27e-85 | NTclustered | gi|470486527|ref|NR_076763.1| | 453230 | g161774 | i0 | 96 | 219.975 | 200 | 8 | 100 | 0 | 1 | 200 | 2345 | 2544 | Desulfarculus baarsii strain 2st14 23S ribosomal RNA gene, complete sequence | blastn | 43995 | 326 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfarculia | Desulfarculales | Desulfarculaceae | Desulfarculus | Desulfarculus baarsii | ||
| 25196758 | 25196758 | PRJNA983848_P_NODE_75240_length_360_cov_1.885017_g69357_i0 | PRJNA983848 | 75240 | 360 | 1.885017 | 6.7860612 | Candidatus Desulfofervidus auxilii | 1621989 | Bacteria | Bacteria | 165 | 4.2e-36 | NTclustered | gi|1001906061|gb|CP013015.1| | 1621989 | g69357 | i0 | 78.652 | 146.625 | 267 | 44 | 71 | 10 | 104 | 360 | 268496 | 268233 | Candidatus Desulfofervidus auxilii strain HS1 genome | blastn | 52785 | 165 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Candidatus Desulfofervidia | Candidatus Desulfofervidales | Candidatus Desulfofervidaceae | Candidatus Desulfofervidus | Candidatus Desulfofervidus auxilii | ||
| 28921019 | 28921019 | PRJNA983848_P_NODE_72328_length_370_cov_1.232323_g66445_i0 | PRJNA983848 | 72328 | 370 | 1.232323 | 4.5595951 | Desulfobacteraceae bacterium | 2049433 | Bacteria | Bacteria | 83.2 | 1.08e-15 | NR | MCP3898553.1 | 2049433 | g66445 | i0 | 45.2 | 1.53243243243243 | 93 | 48 | 73 | 2 | 273 | 4 | 549 | 641 | MCP3898553.1 hypothetical protein [Desulfobacteraceae bacterium] | diamond | 567 | 83.2 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfobacteraceae | Desulfobacteraceae bacterium | |||
| 30594937 | 30594937 | PRJNA983848_P_NODE_62713_length_408_cov_2.614925_g56831_i0 | PRJNA983848 | 62713 | 408 | 2.614925 | 10.668894 | Desulfatitalea alkaliphila | 2929485 | Bacteria | Bacteria | 45.1 | 0.0331 | NR | WP_246908132.1 | 2929485 | g56831 | i0 | 34.3 | 0.514705882352941 | 70 | 44 | 50 | 2 | 132 | 335 | 71 | 140 | WP_246908132.1 PKD domain-containing protein [Desulfatitalea alkaliphila] | diamond | 210 | 45.1 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfosarcinaceae | Desulfatitalea | Desulfatitalea alkaliphila | ||
| 30721332 | 30721332 | PRJNA983848_P_NODE_148174_length_248_cov_0.891429_g142291_i0 | PRJNA983848 | 148174 | 248 | 0.891429 | 2.21074392 | Desulfovermiculus sp. | 2821143 | Bacteria | Bacteria | 77 | 3.02e-14 | NR | MBS3779086.1 | 2821143 | g142291 | i0 | 97.2 | 1.31854838709677 | 36 | 1 | 43.5 | 0 | 4 | 111 | 358 | 393 | MBS3779086.1 TRAP transporter large permease [Desulfovermiculus sp.] | diamond | 327 | 77 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfohalobiaceae | Desulfovermiculus | Desulfovermiculus sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;