RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA983848", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA983848 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7649564 7649564 PRJNA983848_P_NODE_165786_length_228_cov_2.012903_g159903_i0 PRJNA983848 165786 228 2.012903 4.5894188400000004 Pseudobdellovibrio 2862745 Bacteria Bacteria 357 3.85e-94   NTclustered gi|507148233|ref|NR_103040.1| 453816 g159903 i0 94.805 135.394736842105 231 9 100 2 1 228 848 618 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 30870 357 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
9895731 9895731 PRJNA983848_P_NODE_141308_length_251_cov_1.314607_g135425_i0 PRJNA983848 141308 251 1.314607 3.29966357 Bacteriovorax stolpii 960 Bacteria Bacteria 392 1.18e-104   NTclustered gi|1700689994|gb|CP030035.1| 960 g135425 i0 94.821 2 251 13 100 0 1 251 1001498 1001748 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 502 392 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
14996179 14996179 PRJNA983848_P_NODE_160992_length_241_cov_2.279762_g155109_i0 PRJNA983848 160992 241 2.279762 5.49422642 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 265 2.5599999999999996e-66   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g155109 i0 87.826 160.298755186722 230 22 94 5 15 241 3251641 3251867 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 38632 265 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27721809 27721809 PRJNA983848_P_NODE_108604_length_289_cov_1.379630_g102721_i0 PRJNA983848 108604 289 1.37963 3.9871307 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 43.1 0.0387   NR MEC9282068.1 3034175 g102721 i0 36.1 0.633217993079585 61 38 62.3 1 102 281 110 170 MEC9282068.1 hypothetical protein [Bdellovibrionota bacterium] diamond 183 43.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;