RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA983848", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA983848 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11172376 11172376 PRJNA983848_P_NODE_33189_length_726_cov_3.886677_g27498_i0 PRJNA983848 33189 726 3.886677 28.21727502 Vavraia culicis 103449 Fungi Fungi 102 7.11e-17   NTclustered gi|667636757|ref|XR_552273.1| 948595 g27498 i0 83.186 0.15564738292011 113 18 16 1 424 536 1461 1572 Vavraia culicis subsp. floridensis 28S ribosomal RNA (VCUG_02832), partial rRNA blastn 113 102 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Vavraia Vavraia culicis
20093621 20093621 PRJNA983848_P_NODE_129676_length_262_cov_1.238095_g123793_i0 PRJNA983848 129676 262 1.238095 3.2438089 Heterosporis sp. NBDP-2013a 1289055 Fungi Fungi 75 5.1e-9   NTclustered gi|448278458|gb|KC137554.1| 1289055 g123793 i0 95.652 0.175572519083969 46 2 18 0 183 228 2917 2962 Heterosporis sp. NBDP-2013a isolate MN/CISCO small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 46 75 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;