RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA983848", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 11 ✖

tax_clade 1

  • Sar · 11 ✖

bioproject 1

  • PRJNA983848 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
969679 969679 PRJNA983848_P_NODE_51801_length_475_cov_7.106965_g45924_i0 PRJNA983848 51801 475 7.106965 33.75808375 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 149 1.6499999999999998e-42   NR KAF4718031.1 32597 g45924 i0 80.2 12.4421052631579 91 18 57.5 0 6 278 84 174 KAF4718031.1 40S ribosomal protein S9 [Perkinsus olseni] diamond 5910 150 0.993333333333333 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
23921050 23921050 PRJNA983848_P_NODE_167579_length_201_cov_15.171875_g161696_i0 PRJNA983848 167579 201 15.171875 30.49546875 Gadixcellia gadi 2759754 SAR_Eukaryotes SAR_Eukaryotes 121 4.7199999999999996e-23   NTclustered gi|1148361587|gb|KY628819.1| 2759754 g161696 i0 84.874 1.23383084577114 119 18 59 0 70 188 5230 5112 Gadixcellia gadi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 248 121 1 Eukaryota Sar   Perkinsozoa   Perkinsida Xcellidae Gadixcellia Gadixcellia gadi
25197442 25197442 PRJNA983848_P_NODE_94060_length_314_cov_1.294606_g88177_i0 PRJNA983848 94060 314 1.294606 4.06506284 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 57.4 5.58e-7   NR KAF4653926.1 330153 g88177 i0 60.9 0.439490445859873 46 13 39.2 1 313 191 46 91 KAF4653926.1 hypothetical protein FOL47_010228 [Perkinsus chesapeaki] diamond 138 57.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
27468887 27468887 PRJNA983848_P_NODE_155343_length_244_cov_1.350877_g149460_i0 PRJNA983848 155343 244 1.350877 3.29613988 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 64.3 4.45e-10   NR XP_002786483.1 423536 g149460 i0 40 1.89344262295082 80 46 98.4 1 242 3 51 128 XP_002786483.1 nucleotidyltransferase, putative [Perkinsus marinus ATCC 50983] diamond 462 64.3 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
27847525 27847525 PRJNA983848_P_NODE_48224_length_507_cov_1.377880_g42351_i0 PRJNA983848 48224 507 1.37788 6.9858516 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 63.5 1.22e-8   NR XP_002786644.1 423536 g42351 i0 56 1.82248520710059 50 22 29.6 0 260 111 1 50 XP_002786644.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 924 63.5 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
30032451 30032451 PRJNA983848_P_NODE_68991_length_382_cov_1.009709_g63108_i0 PRJNA983848 68991 382 1.009709 3.85708838 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 156 8.44e-45   NR KAF4744982.1 32597 g63108 i0 63.2 8.64659685863874 125 46 98.2 0 1 375 112 236 KAF4744982.1 3-ketoacyl-CoA thiolase, peroxisomal, partial [Perkinsus olseni] diamond 3303 157 0.993630573248408 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
30317211 30317211 PRJNA983848_P_NODE_142332_length_251_cov_0.876404_g136449_i0 PRJNA983848 142332 251 0.876404 2.19977404 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0473   NR KAF4709579.1 32597 g136449 i0 45 1.51792828685259 40 22 47.8 0 122 3 115 154 KAF4709579.1 hypothetical protein FOZ63_033961, partial [Perkinsus olseni] diamond 381 42.7 0.992974238875878 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
30405928 30405928 PRJNA983848_P_NODE_158733_length_242_cov_3.159763_g152850_i0 PRJNA983848 158733 242 3.159763 7.64662646 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 108 1.37e-25   NR XP_002783520.1 423536 g152850 i0 71.3 1.98347107438017 80 23 99.2 0 242 3 40 119 XP_002783520.1 T-complex protein 1 subunit theta, putative [Perkinsus marinus ATCC 50983] diamond 480 108 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
31960476 31960476 PRJNA983848_P_NODE_49697_length_493_cov_3.214286_g43821_i0 PRJNA983848 49697 493 3.214286 15.84642998 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 223 2.85e-70   NR KAF4689453.1 32597 g43821 i0 75.2 2.59229208924949 141 35 85.8 0 424 2 1 141 KAF4689453.1 40S ribosomal protein S4, X isoform [Perkinsus olseni] diamond 1278 223 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32302888 32302888 PRJNA983848_P_NODE_134479_length_256_cov_1.704918_g128596_i0 PRJNA983848 134479 256 1.704918 4.36459008 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 55.8 3.13e-7   NR XP_002765022.1 423536 g128596 i0 39.4 1.546875 66 40 77.3 0 5 202 88 153 XP_002765022.1 hypothetical protein Pmar_PMAR004478, partial [Perkinsus marinus ATCC 50983] diamond 396 55.8 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
32845083 32845083 PRJNA983848_P_NODE_51880_length_475_cov_2.089552_g46003_i0 PRJNA983848 51880 475 2.089552 9.925372 Perkinsida 27998 SAR_Eukaryotes SAR_Eukaryotes 88.6 4.53e-17   NR KAF4653858.1 330153 g46003 i0 57.4 0.852631578947368 68 29 42.9 0 475 272 543 610 KAF4653858.1 hypothetical protein FOL47_010271 [Perkinsus chesapeaki] diamond 405 88.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;