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contig_metadata

13 rows where bioproject = "PRJNA983848", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 13 ✖

tax_clade 1

  • Sar · 13 ✖

bioproject 1

  • PRJNA983848 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2547207 2547207 PRJNA983848_P_NODE_33082_length_729_cov_4.420732_g27394_i0 PRJNA983848 33082 729 4.420732 32.22713628 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 122 5.48e-23   NTclustered gi|325187249|emb|FR824179.1| 890382 g27394 i0 91.111 13.1604938271605 90 8 12 0 1 90 9336 9247 Albugo laibachii Nc14, genomic contig CONTIG_134_NC14_v4_68328_217 blastn 9594 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
12445620 12445620 PRJNA983848_P_NODE_109510_length_287_cov_3.336449_g103627_i0 PRJNA983848 109510 287 3.336449 9.57560863 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 121 7.169999999999999e-23   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g103627 i0 88.889 26.5435540069686 99 9 34 2 190 287 41764 41667 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 7618 121 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
17849162 17849162 PRJNA983848_P_NODE_156914_length_243_cov_1.835294_g151031_i0 PRJNA983848 156914 243 1.835294 4.45976442 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 172 1.6099999999999996e-38   NTclustered gi|50261276|ref|NC_005984.1| 4770 g151031 i0 81.081 100.604938271605 222 36 90 6 17 234 10573 10354 Saprolegnia ferax mitochondrion, complete genome blastn 24447 172 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
18821152 18821152 PRJNA983848_P_NODE_44515_length_544_cov_2.318471_g38654_i0 PRJNA983848 44515 544 2.318471 12.61248224 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 274 3.67e-91   NR KAG1694345.1 4784 g38654 i0 72.4 11.2444852941176 170 47 93.8 0 35 544 1 170 KAG1694345.1 40S ribosomal protein S4 [Phytophthora capsici] diamond 6117 275 0.996363636363636 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
26652205 26652205 PRJNA983848_P_NODE_114621_length_280_cov_2.328502_g108738_i0 PRJNA983848 114621 280 2.328502 6.5198056 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 84 9.27e-18   NR KAF4041280.1 4787 g108738 i0 77.4 4.81071428571429 53 12 56.8 0 160 2 3 55 KAF4041280.1 ADP-ribosylation factor family [Phytophthora infestans] diamond 1347 84.7 0.991735537190083 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
26677874 26677874 PRJNA983848_P_NODE_38601_length_624_cov_2.430127_g32787_i0 PRJNA983848 38601 624 2.430127 15.16399248 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 49.3 0.0012   NR XP_008878838.1 157072 g32787 i0 43.8 0.706730769230769 96 49 46.2 3 622 335 60 150 XP_008878838.1 hypothetical protein H310_13208 [Aphanomyces invadans] diamond 441 49.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
27948375 27948375 PRJNA983848_P_NODE_119965_length_273_cov_3.010000_g114082_i0 PRJNA983848 119965 273 3.01 8.2173 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 52.4 2.17e-5   NR KAG1712859.1 4784 g114082 i0 39.3 14.9120879120879 61 35 64.8 1 178 2 345 405 KAG1712859.1 hypothetical protein DVH05_000594 [Phytophthora capsici] diamond 4071 52.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
28289520 28289520 PRJNA983848_P_NODE_130386_length_261_cov_1.521277_g124503_i0 PRJNA983848 130386 261 1.521277 3.97053297 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 111 3.72e-26   NR XP_008610953.1 1156394 g124503 i0 76.9 3.55172413793103 65 15 74.7 0 195 1 5 69 XP_008610953.1 transketolase [Saprolegnia diclina VS20] diamond 927 111 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
29527103 29527103 PRJNA983848_P_NODE_150350_length_246_cov_3.763006_g144467_i0 PRJNA983848 150350 246 3.763006 9.25699476 root 1 Root_unresolved Root_unresolved 43.9 0.0155   NR OQS07843.1 74557 g144467 i0 40 3.5609756097561 50 27 57.3 1 106 246 292 341 OQS07843.1 ankyrin repeat domain-containing protein 50-like, partial [Thraustotheca clavata] diamond 876 43.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
29773520 29773520 PRJNA983848_P_NODE_155631_length_244_cov_0.912281_g149748_i0 PRJNA983848 155631 244 0.912281 2.22596564 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 80.1 2.59e-15   NR KAG9404574.1 112091 g149748 i0 42.5 6.73770491803279 80 45 98.4 1 242 3 586 664 KAG9404574.1 cyclin-dependent kinase inhibitor far1 [Aphanomyces cochlioides] diamond 1644 80.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
30822226 30822226 PRJNA983848_P_NODE_114174_length_281_cov_1.500000_g108291_i0 PRJNA983848 114174 281 1.5 4.215 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 50.1 1.49e-4   NR KAF1322894.1 82926 g108291 i0 84 0.790035587188612 25 4 26.7 0 280 206 387 411 KAF1322894.1 3-ketoacyl-coa thiolase a, partial [Globisporangium splendens] diamond 222 50.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
32150433 32150433 PRJNA983848_P_NODE_108578_length_289_cov_1.430556_g102695_i0 PRJNA983848 108578 289 1.430556 4.13430684 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 114 7.46e-28   NR KAF0693013.1 120398 g102695 i0 66.7 5.41868512110727 75 25 77.9 0 288 64 312 386 KAF0693013.1 hypothetical protein As57867_015906 [Aphanomyces stellatus] diamond 1566 114 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
32687539 32687539 PRJNA983848_P_NODE_146800_length_248_cov_1.782857_g140917_i0 PRJNA983848 146800 248 1.782857 4.42148536 Peronosporales 4776 SAR_Eukaryotes SAR_Eukaryotes 114 3.55e-27   NR XP_067823922.1 4779 g140917 i0 72 7.93548387096774 82 21 99.2 2 247 2 299 378 XP_067823922.1 hypothetical protein CCR75_001487 [Bremia lactucae] diamond 1968 114 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;