RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA983848", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA983848 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18818284 18818284 PRJNA983848_P_NODE_113055_length_282_cov_3.913876_g107172_i0 PRJNA983848 113055 282 3.913876 11.03713032 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 387 6.279999999999998e-103   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g107172 i0 91.489 7.13829787234043 282 23 99 1 1 281 1250912 1250631 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 2013 387 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
20097519 20097519 PRJNA983848_P_NODE_88596_length_325_cov_2.261905_g82713_i0 PRJNA983848 88596 325 2.261905 7.35119125 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 479 1.1799999999999993e-130   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g82713 i0 93.231 899.304615384615 325 22 100 0 1 325 1251283 1250959 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 292274 479 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;