RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA983848", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA983848 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6073055 6073055 PRJNA983848_P_NODE_55345_length_450_cov_28.289125_g49466_i0 PRJNA983848 55345 450 28.289125 127.3010625 Karpovia croatica 2925417 Root_unresolved Root_unresolved 100 1.53e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g49466 i0 88.235 13.1933333333333 85 9 19 1 48 132 6103 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5937 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
13723324 13723324 PRJNA983848_P_NODE_52211_length_472_cov_172.408521_g46334_i0 PRJNA983848 52211 472 172.408521 813.76821912 Karpovia croatica 2925417 Root_unresolved Root_unresolved 100 1.62e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g46334 i0 88.235 12.9957627118644 85 9 18 1 341 425 6020 6103 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6134 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;