RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA983848", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 12 ✖

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA983848 · 12 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
970204 970204 PRJNA983848_P_NODE_65961_length_393_cov_125.787500_g60078_i0 PRJNA983848 65961 393 125.7875 494.344875 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 693 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g60078 i0 98.473 35.2213740458015 393 6 100 0 1 393 6704 7096 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13842 693 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
971137 971137 PRJNA983848_P_NODE_91161_length_319_cov_34.500000_g85278_i0 PRJNA983848 91161 319 34.5 110.055 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 590 5.1299999999999986e-164   NTclustered gi|300078496|gb|GU001158.1| 5778 g85278 i0 100 46.1379310344828 319 0 100 0 1 319 3430 3748 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14718 590 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8622379 8622379 PRJNA983848_P_NODE_42307_length_571_cov_2.052209_g36457_i0 PRJNA983848 42307 571 2.052209 11.71811339 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 673 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g36457 i0 88.153 1.00525394045534 574 56 100 12 1 571 331 895 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 574 673 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8622809 8622809 PRJNA983848_P_NODE_54407_length_456_cov_4.736292_g48528_i0 PRJNA983848 54407 456 4.736292 21.59749152 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 719 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g48528 i0 95.207 59.1776315789474 459 15 100 5 1 456 20542 20088 Hartmannella vermiformis mitochondrion, complete genome blastn 26985 719 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8623226 8623226 PRJNA983848_P_NODE_65567_length_395_cov_2.655280_g59684_i0 PRJNA983848 65567 395 2.65528 10.488356 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 396 1.52e-105   NTclustered gi|292559443|ref|NC_013986.1| 5778 g59684 i0 85.176 2.0126582278481 398 46 99 12 3 395 25601 25990 Hartmannella vermiformis mitochondrion, complete genome blastn 795 396 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11173627 11173627 PRJNA983848_P_NODE_66449_length_391_cov_157.144654_g60566_i0 PRJNA983848 66449 391 157.144654 614.43559714 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 695 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g60566 i0 98.721 9.0460358056266 391 5 100 0 1 391 1256 1646 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3537 695 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11475318 11475318 PRJNA983848_P_NODE_61809_length_412_cov_198.300885_g55927_i0 PRJNA983848 61809 412 198.300885 816.9996462 Vermamoeba 1260114 Tubulinea other_Eukaryota 749 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g55927 i0 99.513 35.422330097087404 411 2 99 0 1 411 2435 2845 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14594 749 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13720762 13720762 PRJNA983848_P_NODE_128991_length_262_cov_2.873016_g123108_i0 PRJNA983848 128991 262 2.873016 7.52730192 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 379 9.649999999999998e-101   NTclustered gi|292559443|ref|NC_013986.1| 5778 g123108 i0 92.748 1.9618320610687 262 19 100 0 1 262 28044 28305 Hartmannella vermiformis mitochondrion, complete genome blastn 514 379 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17849178 17849178 PRJNA983848_P_NODE_166574_length_221_cov_38.452703_g160691_i0 PRJNA983848 166574 221 38.452703 84.98047363 Vermamoeba 1260114 Tubulinea other_Eukaryota 401 1.6899999999999995e-107   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g160691 i0 99.548 100 221 0 100 1 1 221 361 142 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 22100 401 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20092804 20092804 PRJNA983848_P_NODE_105696_length_293_cov_2.045455_g99813_i0 PRJNA983848 105696 293 2.045455 5.99318315 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 486 6.2799999999999984e-133   NTclustered gi|292559443|ref|NC_013986.1| 5778 g99813 i0 96.587 60.3310580204778 293 10 100 0 1 293 27067 27359 Hartmannella vermiformis mitochondrion, complete genome blastn 17677 486 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21372247 21372247 PRJNA983848_P_NODE_62477_length_409_cov_4.669643_g56595_i0 PRJNA983848 62477 409 4.669643 19.09883987 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 616 1.11e-171   NTclustered gi|292559443|ref|NC_013986.1| 5778 g56595 i0 94.279 14.9242053789731 402 23 98 0 8 409 26933 26532 Hartmannella vermiformis mitochondrion, complete genome blastn 6104 616 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22949358 22949358 PRJNA983848_P_NODE_75718_length_358_cov_4.677193_g69835_i0 PRJNA983848 75718 358 4.677193 16.74435094 root 1 Root_unresolved Root_unresolved 595 1.2499999999999995e-165   NTclustered gi|292559443|ref|NC_013986.1| 5778 g69835 i0 96.648 46.7793296089385 358 12 100 0 1 358 19556 19913 Hartmannella vermiformis mitochondrion, complete genome blastn 16747 595 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;