RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA983848", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA983848 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3521677 3521677 PRJNA983848_P_NODE_88883_length_324_cov_14.394422_g83000_i0 PRJNA983848 88883 324 14.394422 46.63792728 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 363 1.24e-95   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g83000 i0 89.42 0.904320987654321 293 23 89 6 1 289 32821 33109 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 293 363 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
4795256 4795256 PRJNA983848_P_NODE_132944_length_258_cov_1.664865_g127061_i0 PRJNA983848 132944 258 1.664865 4.2953517 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 442 1.1899999999999995e-119   NTclustered gi|470394462|ref|XM_004334945.1| 1257118 g127061 i0 98.406 4.86434108527132 251 4 97 0 8 258 1 251 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096510), partial mRNA blastn 1255 442 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6071370 6071370 PRJNA983848_P_NODE_157565_length_243_cov_0.917647_g151682_i0 PRJNA983848 157565 243 0.917647 2.22988221 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 385 1.8999999999999993e-102   NTclustered gi|300078498|gb|GU001160.1| 5755 g151682 i0 95.51 2.96296296296296 245 4 100 6 1 243 7020 6781 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 720 385 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16269492 16269492 PRJNA983848_P_NODE_113113_length_282_cov_2.985646_g107230_i0 PRJNA983848 113113 282 2.985646 8.41952172 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 283 8.469999999999999e-72   NTclustered gi|300078498|gb|GU001160.1| 5755 g107230 i0 95 1.72695035460993 180 9 64 0 103 282 6319 6140 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 487 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18820902 18820902 PRJNA983848_P_NODE_37875_length_635_cov_12.902135_g32066_i0 PRJNA983848 37875 635 12.902135 81.92855725 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 597 6.459999999999999e-166   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g32066 i0 84.031 22.5212598425197 645 77 99 23 3 634 31774 32405 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 14301 597 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
22647949 22647949 PRJNA983848_P_NODE_82738_length_339_cov_1.759398_g76855_i0 PRJNA983848 82738 339 1.759398 5.96435922 Acanthamoeba healyi 65661 Discosea other_Eukaryota 75 6.83e-9   NTclustered gi|28194604|gb|AF479548.1| 65661 g76855 i0 88.525 0.179941002949853 61 7 18 0 38 98 292 232 Acanthamoeba healyi strain CDC V013 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 61 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
23919030 23919030 PRJNA983848_P_NODE_108799_length_288_cov_3.702326_g102916_i0 PRJNA983848 108799 288 3.702326 10.66269888 Paramoeba perurans 437603 Discosea other_Eukaryota 331 3.06e-86   NTclustered gi|145386781|gb|EF216906.1| 437603 g102916 i0 88.256 62.5972222222222 281 27 98 5 8 288 144 418 Neoparamoeba perurans strain GD-D1/1 28S large subunit ribosomal RNA gene, partial sequence blastn 18028 331 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
23922352 23922352 PRJNA983848_P_NODE_54039_length_459_cov_2.098446_g48161_i0 PRJNA983848 54039 459 2.098446 9.63186714 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 673 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g48161 i0 93.038 13.7625272331155 474 12 100 12 1 459 5920 5453 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6317 673 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;