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contig_metadata

25 rows where bioproject = "PRJNA983848" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 25 ✖

bioproject 1

  • PRJNA983848 · 25 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
970204 970204 PRJNA983848_P_NODE_65961_length_393_cov_125.787500_g60078_i0 PRJNA983848 65961 393 125.7875 494.344875 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 693 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g60078 i0 98.473 35.2213740458015 393 6 100 0 1 393 6704 7096 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13842 693 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
971137 971137 PRJNA983848_P_NODE_91161_length_319_cov_34.500000_g85278_i0 PRJNA983848 91161 319 34.5 110.055 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 590 5.1299999999999986e-164   NTclustered gi|300078496|gb|GU001158.1| 5778 g85278 i0 100 46.1379310344828 319 0 100 0 1 319 3430 3748 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14718 590 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3521677 3521677 PRJNA983848_P_NODE_88883_length_324_cov_14.394422_g83000_i0 PRJNA983848 88883 324 14.394422 46.63792728 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 363 1.24e-95   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g83000 i0 89.42 0.904320987654321 293 23 89 6 1 289 32821 33109 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 293 363 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
4795256 4795256 PRJNA983848_P_NODE_132944_length_258_cov_1.664865_g127061_i0 PRJNA983848 132944 258 1.664865 4.2953517 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 442 1.1899999999999995e-119   NTclustered gi|470394462|ref|XM_004334945.1| 1257118 g127061 i0 98.406 4.86434108527132 251 4 97 0 8 258 1 251 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096510), partial mRNA blastn 1255 442 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4798228 4798228 PRJNA983848_P_NODE_68484_length_384_cov_1.266881_g62601_i0 PRJNA983848 68484 384 1.266881 4.86482304 Heterostelium album 2086695 Evosea other_Eukaryota 56.5 0.003   NTclustered gi|1160566688|ref|XM_020580969.1| 670386 g62601 i0 90.698 0.552083333333333 43 3 11 1 169 211 74 33 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 212 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
6071370 6071370 PRJNA983848_P_NODE_157565_length_243_cov_0.917647_g151682_i0 PRJNA983848 157565 243 0.917647 2.22988221 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 385 1.8999999999999993e-102   NTclustered gi|300078498|gb|GU001160.1| 5755 g151682 i0 95.51 2.96296296296296 245 4 100 6 1 243 7020 6781 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 720 385 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7348889 7348889 PRJNA983848_P_NODE_89226_length_324_cov_1.498008_g83343_i0 PRJNA983848 89226 324 1.498008 4.85354592 Dictyostelium discoideum 44689 Evosea other_Eukaryota 58.4 6.54e-4   NTclustered gi|66806844|ref|XM_632053.1| 352472 g83343 i0 100 3.51543209876543 31 0 10 0 293 323 1666 1636 Dictyostelium discoideum AX4 myb domain-containing protein (mybD) mRNA, complete cds blastn 1139 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
8622379 8622379 PRJNA983848_P_NODE_42307_length_571_cov_2.052209_g36457_i0 PRJNA983848 42307 571 2.052209 11.71811339 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 673 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g36457 i0 88.153 1.00525394045534 574 56 100 12 1 571 331 895 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 574 673 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8622809 8622809 PRJNA983848_P_NODE_54407_length_456_cov_4.736292_g48528_i0 PRJNA983848 54407 456 4.736292 21.59749152 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 719 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g48528 i0 95.207 59.1776315789474 459 15 100 5 1 456 20542 20088 Hartmannella vermiformis mitochondrion, complete genome blastn 26985 719 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8623226 8623226 PRJNA983848_P_NODE_65567_length_395_cov_2.655280_g59684_i0 PRJNA983848 65567 395 2.65528 10.488356 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 396 1.52e-105   NTclustered gi|292559443|ref|NC_013986.1| 5778 g59684 i0 85.176 2.0126582278481 398 46 99 12 3 395 25601 25990 Hartmannella vermiformis mitochondrion, complete genome blastn 795 396 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11173627 11173627 PRJNA983848_P_NODE_66449_length_391_cov_157.144654_g60566_i0 PRJNA983848 66449 391 157.144654 614.43559714 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 695 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g60566 i0 98.721 9.0460358056266 391 5 100 0 1 391 1256 1646 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3537 695 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11475318 11475318 PRJNA983848_P_NODE_61809_length_412_cov_198.300885_g55927_i0 PRJNA983848 61809 412 198.300885 816.9996462 Vermamoeba 1260114 Tubulinea other_Eukaryota 749 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g55927 i0 99.513 35.422330097087404 411 2 99 0 1 411 2435 2845 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14594 749 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13720762 13720762 PRJNA983848_P_NODE_128991_length_262_cov_2.873016_g123108_i0 PRJNA983848 128991 262 2.873016 7.52730192 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 379 9.649999999999998e-101   NTclustered gi|292559443|ref|NC_013986.1| 5778 g123108 i0 92.748 1.9618320610687 262 19 100 0 1 262 28044 28305 Hartmannella vermiformis mitochondrion, complete genome blastn 514 379 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16269492 16269492 PRJNA983848_P_NODE_113113_length_282_cov_2.985646_g107230_i0 PRJNA983848 113113 282 2.985646 8.41952172 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 283 8.469999999999999e-72   NTclustered gi|300078498|gb|GU001160.1| 5755 g107230 i0 95 1.72695035460993 180 9 64 0 103 282 6319 6140 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 487 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17849178 17849178 PRJNA983848_P_NODE_166574_length_221_cov_38.452703_g160691_i0 PRJNA983848 166574 221 38.452703 84.98047363 Vermamoeba 1260114 Tubulinea other_Eukaryota 401 1.6899999999999995e-107   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g160691 i0 99.548 100 221 0 100 1 1 221 361 142 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 22100 401 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18820902 18820902 PRJNA983848_P_NODE_37875_length_635_cov_12.902135_g32066_i0 PRJNA983848 37875 635 12.902135 81.92855725 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 597 6.459999999999999e-166   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g32066 i0 84.031 22.5212598425197 645 77 99 23 3 634 31774 32405 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 14301 597 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
20092804 20092804 PRJNA983848_P_NODE_105696_length_293_cov_2.045455_g99813_i0 PRJNA983848 105696 293 2.045455 5.99318315 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 486 6.2799999999999984e-133   NTclustered gi|292559443|ref|NC_013986.1| 5778 g99813 i0 96.587 60.3310580204778 293 10 100 0 1 293 27067 27359 Hartmannella vermiformis mitochondrion, complete genome blastn 17677 486 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21372247 21372247 PRJNA983848_P_NODE_62477_length_409_cov_4.669643_g56595_i0 PRJNA983848 62477 409 4.669643 19.09883987 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 616 1.11e-171   NTclustered gi|292559443|ref|NC_013986.1| 5778 g56595 i0 94.279 14.9242053789731 402 23 98 0 8 409 26933 26532 Hartmannella vermiformis mitochondrion, complete genome blastn 6104 616 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21373481 21373481 PRJNA983848_P_NODE_96437_length_309_cov_2.105932_g90554_i0 PRJNA983848 96437 309 2.105932 6.50732988 Dictyostelium purpureum 5786 Evosea other_Eukaryota 54.7 0.008   NTclustered gi|330795564|ref|XM_003285795.1| 5786 g90554 i0 100 0.184466019417476 29 0 9 0 18 46 1494 1522 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_97185), partial mRNA blastn 57 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
22647949 22647949 PRJNA983848_P_NODE_82738_length_339_cov_1.759398_g76855_i0 PRJNA983848 82738 339 1.759398 5.96435922 Acanthamoeba healyi 65661 Discosea other_Eukaryota 75 6.83e-9   NTclustered gi|28194604|gb|AF479548.1| 65661 g76855 i0 88.525 0.179941002949853 61 7 18 0 38 98 292 232 Acanthamoeba healyi strain CDC V013 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 61 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
22949358 22949358 PRJNA983848_P_NODE_75718_length_358_cov_4.677193_g69835_i0 PRJNA983848 75718 358 4.677193 16.74435094 root 1 Root_unresolved Root_unresolved 595 1.2499999999999995e-165   NTclustered gi|292559443|ref|NC_013986.1| 5778 g69835 i0 96.648 46.7793296089385 358 12 100 0 1 358 19556 19913 Hartmannella vermiformis mitochondrion, complete genome blastn 16747 595 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23919030 23919030 PRJNA983848_P_NODE_108799_length_288_cov_3.702326_g102916_i0 PRJNA983848 108799 288 3.702326 10.66269888 Paramoeba perurans 437603 Discosea other_Eukaryota 331 3.06e-86   NTclustered gi|145386781|gb|EF216906.1| 437603 g102916 i0 88.256 62.5972222222222 281 27 98 5 8 288 144 418 Neoparamoeba perurans strain GD-D1/1 28S large subunit ribosomal RNA gene, partial sequence blastn 18028 331 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
23922352 23922352 PRJNA983848_P_NODE_54039_length_459_cov_2.098446_g48161_i0 PRJNA983848 54039 459 2.098446 9.63186714 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 673 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g48161 i0 93.038 13.7625272331155 474 12 100 12 1 459 5920 5453 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6317 673 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27057965 27057965 PRJNA983848_P_NODE_74222_length_363_cov_2.406897_g68339_i0 PRJNA983848 74222 363 2.406897 8.73703611 Polysphondylium violaceum 133409 Evosea other_Eukaryota 44.7 0.0283   NR KAF2070681.1 133409 g68339 i0 40 0.413223140495868 50 30 41.3 0 91 240 105 154 KAF2070681.1 hypothetical protein CYY_008007 [Polysphondylium violaceum] diamond 150 44.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
28358680 28358680 PRJNA983848_P_NODE_114666_length_280_cov_2.183575_g108783_i0 PRJNA983848 114666 280 2.183575 6.11401 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 122 1.3899999999999999e-31   NR XP_003290234.1 5786 g108783 i0 66.7 5.775 90 30 96.4 0 2 271 201 290 XP_003290234.1 uncharacterized protein DICPUDRAFT_95090 [Dictyostelium purpureum] diamond 1617 122 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;