RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA983838", tax_phylum = "Mycoplasmatota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA983838 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27816271 27816271 PRJNA983838_P_NODE_106504_length_251_cov_1.741573_g104137_i0 PRJNA983838 106504 251 1.741573 4.37134823 Mycoplasmatales bacterium 2023991 Bacteria Bacteria 57.8 2.06e-7   NR HXN54441.1 2023991 g104137 i0 68.3 0.49003984063745 41 13 49 0 251 129 337 377 HXN54441.1 reverse transcriptase family protein [Mycoplasmatales bacterium] diamond 123 57.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales     Mycoplasmatales bacterium
31701422 31701422 PRJNA983838_P_NODE_110977_length_248_cov_0.891429_g108610_i0 PRJNA983838 110977 248 0.891429 2.21074392 Acholeplasmatales bacterium 2053494 Bacteria Bacteria 42.7 0.0335   NR MCR5646945.1 2053494 g108610 i0 63.3 0.362903225806452 30 11 36.3 0 91 2 1 30 MCR5646945.1 7-cyano-7-deazaguanine synthase QueC [Acholeplasmatales bacterium] diamond 90 42.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;