RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA983838" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA983838 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6068524 6068524 PRJNA983838_P_NODE_43025_length_489_cov_2.521635_g40660_i0 PRJNA983838 43025 489 2.521635 12.33079515 Mercenaria mercenaria 6596 Mollusca Mollusca 291 9.29e-74   NTclustered gi|2442058763|ref|XM_045347307.2| 6596 g40660 i0 79.147 78.6891615541922 422 86 86 2 69 489 199 619 PREDICTED: Mercenaria mercenaria uncharacterized LOC123556531 (LOC123556531), mRNA blastn 38479 291 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
6069358 6069358 PRJNA983838_P_NODE_98765_length_262_cov_1.301587_g96398_i0 PRJNA983838 98765 262 1.301587 3.41015794 Opisthokonta 33154 Mollusca Mollusca 123 1.6399999999999999e-34   NR KAJ8311570.1 220873 g96398 i0 74 7.21374045801527 77 20 88.2 0 259 29 21 97 KAJ8311570.1 hypothetical protein KUTeg_010925 [Tegillarca granosa] diamond 1890 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Tegillarca Tegillarca granosa
8618672 8618672 PRJNA983838_P_NODE_72567_length_322_cov_2.337349_g70200_i0 PRJNA983838 72567 322 2.337349 7.52626378 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.008   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g70200 i0 96.875 0.198757763975155 32 1 10 0 200 231 8068705 8068736 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
14993613 14993613 PRJNA983838_P_NODE_74852_length_315_cov_1.289256_g72485_i0 PRJNA983838 74852 315 1.289256 4.0611564 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.029   NTclustered gi|2912985489|dbj|AP039590.1| 145626 g72485 i0 100 0.0888888888888889 28 0 9 0 211 238 24788987 24788960 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 9, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
16267688 16267688 PRJNA983838_P_NODE_115073_length_245_cov_0.901163_g112706_i0 PRJNA983838 115073 245 0.901163 2.20784935 Argopecten irradians 31199 Mollusca Mollusca 52.8 0.022   NTclustered gi|2835356162|ref|XM_069250495.1| 31199 g112706 i0 96.875 0.130612244897959 32 0 13 1 29 60 2310 2340 PREDICTED: Argopecten irradians sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1-like (LOC138309319), transcript variant X2, mRNA blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
22641800 22641800 PRJNA983838_P_NODE_112558_length_246_cov_4.069364_g110191_i0 PRJNA983838 112558 246 4.069364 10.01063544 Argopecten irradians 31199 Mollusca Mollusca 141 4.61e-29   NTclustered gi|2835350600|ref|XM_069247595.1| 31199 g110191 i0 94.505 36.979674796748 91 5 37 0 156 246 1442 1352 PREDICTED: Argopecten irradians tubulin beta-4B chain-like (LOC138306988), mRNA blastn 9097 141 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
28548456 28548456 PRJNA983838_P_NODE_63467_length_356_cov_2.028269_g61100_i0 PRJNA983838 63467 356 2.028269 7.22063764 Metazoa 33208 Mollusca Mollusca 97.4 3e-22   NR OWF43802.1 6573 g61100 i0 51.4 14.8061797752809 109 52 91.9 1 2 328 101 208 OWF43802.1 40S ribosomal protein S3a [Mizuhopecten yessoensis] diamond 5271 98.2 0.991853360488798 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
31638084 31638084 PRJNA983838_P_NODE_90376_length_277_cov_1.529412_g88009_i0 PRJNA983838 90376 277 1.529412 4.23647124 Gigantopelta aegis 1735272 Mollusca Mollusca 73.6 7.94e-13   NR XP_041348308.1 1735272 g88009 i0 41.5 0.888086642599278 82 47 88.8 1 246 1 312 392 XP_041348308.1 cytochrome P450 7A1-like [Gigantopelta aegis] diamond 246 73.6 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neomphalida Peltospiridae Gigantopelta Gigantopelta aegis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;