RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA983838" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA983838 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18817652 18817652 PRJNA983838_P_NODE_90315_length_277_cov_1.808824_g87948_i0 PRJNA983838 90315 277 1.808824 5.01044248 Halorubrum sp. PV6 634157 Archaea Archaea 244 3.92e-60   NTclustered gi|1540603140|gb|CP030064.1| 634157 g87948 i0 85.776 18.6967509025271 232 32 83 1 3 233 2540118 2540349 Halorubrum sp. PV6 chromosome, complete genome blastn 5179 244 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. PV6
30279483 30279483 PRJNA983838_P_NODE_94192_length_270_cov_1.401015_g91825_i0 PRJNA983838 94192 270 1.401015 3.7827405 Halostella litorea 2528831 Archaea Archaea 102 9.98e-26   NR WP_135823207.1 2528831 g91825 i0 68.5 0.811111111111111 73 21 81.1 1 270 52 58 128 WP_135823207.1 hypothetical protein [Halostella litorea] diamond 219 102 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronoarchaeaceae Halostella Halostella litorea
32460881 32460881 PRJNA983838_P_NODE_117179_length_243_cov_0.917647_g114812_i0 PRJNA983838 117179 243 0.917647 2.22988221 Natronomonas sp. LN261 2750669 Archaea Archaea 111 5.75e-28   NR WP_181693137.1 2750669 g114812 i0 91.5 0.728395061728395 59 5 72.8 0 177 1 168 226 WP_181693137.1 energy-coupling factor transporter transmembrane component T family protein [Natronomonas sp. LN261] diamond 177 111 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;