RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA983838", tax_kingdom = "Metazoa" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA983838 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30689739 30689739 PRJNA983838_P_NODE_100813_length_258_cov_2.356757_g98446_i0 PRJNA983838 100813 258 2.356757 6.08043306 Rotaria sordida 392033 Rotifera other_Eukaryota 56.2 4.33e-7   NR CAF1375515.1 392033 g98446 i0 43.6 0.63953488372093 55 31 64 0 168 4 63 117 CAF1375515.1 unnamed protein product [Rotaria sordida] diamond 165 56.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sordida
32807572 32807572 PRJNA983838_P_NODE_49580_length_434_cov_2.108033_g47214_i0 PRJNA983838 49580 434 2.108033 9.14886322 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 112 2.71e-27   NR CAF0767949.1 104777 g47214 i0 52.8 6.29723502304148 127 56 86.4 2 59 433 13 137 CAF0767949.1 unnamed protein product [Brachionus calyciflorus] diamond 2733 112 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
32901945 32901945 PRJNA983838_P_NODE_93120_length_272_cov_1.402010_g90753_i0 PRJNA983838 93120 272 1.40201 3.8134672 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 143 7.919999999999998e-42   NR CAF4903121.1 2762511 g90753 i0 75.6 1.98529411764706 90 22 99.3 0 270 1 31 120 CAF4903121.1 unnamed protein product, partial [Rotaria sp. Silwood1] diamond 540 143 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;