RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA983838", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA983838 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28422149 28422149 PRJNA983838_P_NODE_96586_length_265_cov_3.171875_g94219_i0 PRJNA983838 96586 265 3.171875 8.40546875 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 42 0.0111   NR CEO99669.1 37360 g94219 i0 67.9 0.894339622641509 28 9 31.7 0 264 181 35 62 CEO99669.1 hypothetical protein PBRA_007402 [Plasmodiophora brassicae] diamond 237 42 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29994915 29994915 PRJNA983838_P_NODE_97331_length_264_cov_1.952880_g94964_i0 PRJNA983838 97331 264 1.95288 5.1556032 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 75.9 9.97e-14   NR CEO98042.1 37360 g94964 i0 49.3 1.63636363636364 71 36 80.7 0 3 215 405 475 CEO98042.1 hypothetical protein PBRA_006156 [Plasmodiophora brassicae] diamond 432 75.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31575105 31575105 PRJNA983838_P_NODE_120616_length_236_cov_3.576687_g118249_i0 PRJNA983838 120616 236 3.576687 8.44098132 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 95.1 1.27e-20   NR SPQ93088.1 37360 g118249 i0 58.4 2.86016949152542 77 32 97.9 0 232 2 1506 1582 SPQ93088.1 unnamed protein product [Plasmodiophora brassicae] diamond 675 95.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;