RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA983838", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 15 ✖

bioproject 1

  • PRJNA983838 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4792748 4792748 PRJNA983838_P_NODE_110724_length_248_cov_0.891429_g108357_i0 PRJNA983838 110724 248 0.891429 2.21074392 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.13e-124   NTclustered gi|922582372|ref|NR_132584.1| 6239 g108357 i0 100 7.00806451612903 248 0 100 0 1 248 956 709 Caenorhabditis elegans Non-coding transcript of protein-coding gene plpp-1.2 (plpp-1.2), miscRNA blastn 1738 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4792858 4792858 PRJNA983838_P_NODE_116804_length_243_cov_1.835294_g114437_i0 PRJNA983838 116804 243 1.835294 4.45976442 Caenorhabditis elegans 6239 Nematoda Nematoda 449 6.65e-122   NTclustered gi|1972267560|ref|NM_070234.7| 6239 g114437 i0 100 3.0082304526749 243 0 100 0 1 243 271 29 Caenorhabditis elegans UPF0375 protein ule-4 (ule-4), mRNA blastn 731 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6068051 6068051 PRJNA983838_P_NODE_112845_length_246_cov_1.803468_g110478_i0 PRJNA983838 112845 246 1.803468 4.43653128 Caenorhabditis elegans 6239 Nematoda Nematoda 449 6.74e-122   NTclustered gi|6923|emb|X56212.1| 6239 g110478 i0 99.593 11.3130081300813 246 1 100 0 1 246 669 914 C.elegans gene for vitellogenin blastn 2783 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6068997 6068997 PRJNA983838_P_NODE_75745_length_312_cov_2.301255_g73378_i0 PRJNA983838 75745 312 2.301255 7.1799156 Caenorhabditis elegans 6239 Nematoda Nematoda 577 3.89e-160   NTclustered gi|1972265609|ref|NM_066610.8| 6239 g73378 i0 100 5.83653846153846 312 0 100 0 1 312 525 214 Caenorhabditis elegans Fatty-acid and retinol-binding protein 2 (far-2), mRNA blastn 1821 577 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8617811 8617811 PRJNA983838_P_NODE_115947_length_244_cov_0.912281_g113580_i0 PRJNA983838 115947 244 0.912281 2.22596564 Caenorhabditis elegans 6239 Nematoda Nematoda 451 1.86e-122   NTclustered gi|1972230411|ref|NM_059657.6| 6239 g113580 i0 100 3 244 0 100 0 1 244 220 463 Caenorhabditis elegans putative prefoldin subunit 6 (pfd-6), mRNA blastn 732 451 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13719317 13719317 PRJNA983838_P_NODE_75631_length_312_cov_3.895397_g73264_i0 PRJNA983838 75631 312 3.895397 12.15363864 Caenorhabditis elegans 6239 Nematoda Nematoda 577 3.89e-160   NTclustered gi|1831519982|ref|NM_001380933.1| 6239 g73264 i0 100 21.6410256410256 312 0 100 0 1 312 4480 4169 Caenorhabditis elegans Vitellogenin-3 (vit-3), mRNA blastn 6752 577 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13719433 13719433 PRJNA983838_P_NODE_82391_length_294_cov_1.357466_g80024_i0 PRJNA983838 82391 294 1.357466 3.99095004 Caenorhabditis elegans 6239 Nematoda Nematoda 544 3.69e-150   NTclustered gi|687865758|emb|LK927604.1| 6239 g80024 i0 100 3.87414965986395 294 0 100 0 1 294 109626 109919 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000069 blastn 1139 544 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13719715 13719715 PRJNA983838_P_NODE_98651_length_262_cov_1.640212_g96284_i0 PRJNA983838 98651 262 1.640212 4.29735544 Caenorhabditis elegans 6239 Nematoda Nematoda 481 2.57e-131   NTclustered gi|1972294089|ref|NM_001047635.7| 6239 g96284 i0 100 6.99236641221374 260 0 99 0 1 260 1074 815 Caenorhabditis elegans putative elongation factor 1-gamma (eef-1G), partial mRNA blastn 1832 481 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14025229 14025229 PRJNA983838_P_NODE_51731_length_418_cov_5.675362_g49364_i0 PRJNA983838 51731 418 5.675362 23.72301316 Caenorhabditis 6237 Nematoda Nematoda 320 9.99e-83   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g49364 i0 86.598 71.6555023923445 291 37 69 2 126 415 1307 1018 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 29952 320 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
14992572 14992572 PRJNA983838_P_NODE_107772_length_250_cov_1.757062_g105405_i0 PRJNA983838 107772 250 1.757062 4.392655 Caenorhabditis elegans 6239 Nematoda Nematoda 462 8.83e-126   NTclustered gi|1734340879|ref|NM_077518.5| 6239 g105405 i0 100 2.972 250 0 100 0 1 250 4856 5105 Caenorhabditis elegans C-type LECtin (T25C12.3), mRNA blastn 743 462 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18817240 18817240 PRJNA983838_P_NODE_64955_length_350_cov_1.516245_g62588_i0 PRJNA983838 64955 350 1.516245 5.3068575 Caenorhabditis elegans 6239 Nematoda Nematoda 641 1.5399999999999996e-179   NTclustered gi|1972230085|ref|NM_059543.8| 6239 g62588 i0 99.714 23.9342857142857 350 1 100 0 1 350 357 8 Caenorhabditis elegans Large ribosomal subunit protein P2 (rplp-2.1), mRNA blastn 8377 641 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
21367997 21367997 PRJNA983838_P_NODE_84057_length_290_cov_1.437788_g81690_i0 PRJNA983838 84057 290 1.437788 4.1695852 Caenorhabditis elegans 6239 Nematoda Nematoda 536 6.079999999999999e-148   NTclustered gi|351059519|emb|FO080771.1| 6239 g81690 i0 100 3 290 0 100 0 1 290 32951 33240 Caenorhabditis elegans Cosmid C42D4, complete sequence blastn 870 536 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22643013 22643013 PRJNA983838_P_NODE_88458_length_281_cov_1.365385_g86091_i0 PRJNA983838 88458 281 1.365385 3.83673185 Caenorhabditis elegans 6239 Nematoda Nematoda 520 5.909999999999999e-143   NTclustered gi|1972262849|ref|NM_065559.8| 6239 g86091 i0 100 3.02135231316726 281 0 100 0 1 281 165 445 Caenorhabditis elegans Rad60/SUMO-like domain-containing protein (T04A8.8), mRNA blastn 849 520 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23917287 23917287 PRJNA983838_P_NODE_109219_length_249_cov_1.318182_g106852_i0 PRJNA983838 109219 249 1.318182 3.28227318 Caenorhabditis elegans 6239 Nematoda Nematoda 460 3.16e-125   NTclustered gi|1972266897|ref|NM_001028103.4| 6239 g106852 i0 100 5.94779116465863 249 0 100 0 1 249 4895 4647 Caenorhabditis elegans Vitellogenin-6 (vit-6), mRNA blastn 1481 460 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25497840 25497840 PRJNA983838_P_NODE_32400_length_623_cov_2.800000_g30066_i0 PRJNA983838 32400 623 2.8 17.444 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 298 6.02e-100   NR XP_003139952.1 7209 g30066 i0 69.5 29.9373996789727 200 61 96.3 0 605 6 1 200 XP_003139952.1 50S ribosomal protein L16 [Loa loa] diamond 18651 301 0.990033222591362 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;