RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA983838", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA983838 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3515281 3515281 PRJNA983838_P_NODE_111143_length_248_cov_0.891429_g108776_i0 PRJNA983838 111143 248 0.891429 2.21074392 Pseudomonadati 3379134 Bacteria Bacteria 104 1.78e-26   NR MCA9764672.1 2026742 g108776 i0 65.4 1.95967741935484 81 28 98 0 243 1 53 133 MCA9764672.1 electron transfer flavoprotein subunit beta/FixA family protein [Gemmatimonadota bacterium] diamond 486 104 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
12443697 12443697 PRJNA983838_P_NODE_10190_length_1511_cov_5.917246_g9012_i0 PRJNA983838 10190 1511 5.917246 89.40958706 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 1779 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g9012 i0 88.208 163.411647915288 1518 144 100 22 1 1511 3043859 3042370 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 246915 1779 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
29142408 29142408 PRJNA983838_P_NODE_110689_length_248_cov_0.891429_g108322_i0 PRJNA983838 110689 248 0.891429 2.21074392 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.4 0.00423   NR HEY7232507.1 2026741 g108322 i0 50 0.532258064516129 44 19 53.2 1 145 14 273 313 HEY7232507.1 aspartate-semialdehyde dehydrogenase [Gemmatimonadaceae bacterium] diamond 132 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29994909 29994909 PRJNA983838_P_NODE_113751_length_246_cov_0.901734_g111384_i0 PRJNA983838 113751 246 0.901734 2.21826564 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 72.8 7.51e-15   NR HEX5178530.1 2026741 g111384 i0 84.4 0.390243902439024 32 5 39 0 150 245 1 32 HEX5178530.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 96 72.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;