RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA982720" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA982720 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10199989 10199989 PRJNA982720_S_NODE_6488_length_280_cov_1.594203_g6460_i0 PRJNA982720 6488 280 1.594203 4.4637684 root 1 Root_unresolved Root_unresolved 52.8 0.026   NTclustered gi|2835530370|dbj|LC777197.1| 3329 g6460 i0 100 0.6 28 0 10 0 253 280 56 29 Picea abies Pa-Kumamoto-2022 PaMurD mRNA for UDP-MurNAc-L-alanyl-D-glutamate synthetase, complete cds blastn 168 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
11167587 11167587 PRJNA982720_S_NODE_10049_length_236_cov_2.061350_g10021_i0 PRJNA982720 10049 236 2.06135 4.864786 Picea abies 3329 Plants Plants 52.8 0.021   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g10021 i0 100 0.11864406779661 28 0 12 0 1 28 29 56 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
18815951 18815951 PRJNA982720_S_NODE_10515_length_220_cov_4.074830_g10487_i0 PRJNA982720 10515 220 4.07483 8.964626 Cannabis sativa 3483 Plants Plants 54.7 0.005   NTclustered gi|2748511602|gb|CP158658.1| 3483 g10487 i0 100 0.131818181818182 29 0 13 0 92 120 3771578 3771606 Cannabis sativa cultivar ERBxHO40_23 chromosome 7 blastn 29 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
28826196 28826196 PRJNA982720_S_NODE_10488_length_221_cov_21.445946_g10460_i0 PRJNA982720 10488 221 21.445946 47.39554066 Arabidopsis suecica 45249 Plants Plants 42.4 0.0386   NR KAG7563338.1 45249 g10460 i0 34.8 0.936651583710407 69 31 74.7 2 39 203 435 503 KAG7563338.1 Protein kinase C-like phorbol ester/diacylglycerol-binding domain [Arabidopsis suecica] diamond 207 42.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis suecica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;