RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA982720" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA982720 · 11 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27215772 27215772 PRJNA982720_S_NODE_7242_length_270_cov_0.842640_g7214_i0 PRJNA982720 7242 270 0.84264 2.275128 Helicobacter pylori 210 Bacteria Bacteria 74.7 5.83e-15   NR GAA6899797.1 210 g7214 i0 60.9 0.711111111111111 64 25 71.1 0 233 42 54 117 GAA6899797.1 hypothetical protein Kyoto207A_1280 [Helicobacter pylori] diamond 192 74.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27531895 27531895 PRJNA982720_S_NODE_1323_length_408_cov_1.328358_g1295_i0 PRJNA982720 1323 408 1.328358 5.41970064 Helicobacter pylori 210 Bacteria Bacteria 154 1.95e-44   NR GAB0054170.1 210 g1295 i0 60.4 12.8235294117647 134 53 98.5 0 408 7 65 198 GAB0054170.1 hypothetical protein YGH029_14930 [Helicobacter pylori] diamond 5232 155 0.993548387096774 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27816269 27816269 PRJNA982720_S_NODE_1924_length_380_cov_0.801303_g1896_i0 PRJNA982720 1924 380 0.801303 3.0449514 Helicobacter pylori 210 Bacteria Bacteria 55.8 3.84e-7   NR GAA9037147.1 210 g1896 i0 54.9 1.20789473684211 51 23 40.3 0 194 42 3 53 GAA9037147.1 hypothetical protein Kyoto184A_00210 [Helicobacter pylori] diamond 459 55.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29363262 29363262 PRJNA982720_S_NODE_8889_length_250_cov_0.802260_g8861_i0 PRJNA982720 8889 250 0.80226 2.00565 Helicobacter pylori 210 Bacteria Bacteria 68.6 4.44e-12   NR GAA9246112.1 210 g8861 i0 63.9 1.464 61 22 73.2 0 201 19 87 147 GAA9246112.1 hypothetical protein Kyoto199A_0240 [Helicobacter pylori] diamond 366 68.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29463498 29463498 PRJNA982720_S_NODE_3290_length_338_cov_1.079245_g3262_i0 PRJNA982720 3290 338 1.079245 3.6478481 Pseudomonadati 3379134 Bacteria Bacteria 43.5 0.00384   NR GAA6864469.1 210 g3262 i0 46.2 0.701183431952663 39 21 34.6 0 143 259 5 43 GAA6864469.1 hypothetical protein Kyoto206A_2160 [Helicobacter pylori] diamond 237 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30215752 30215752 PRJNA982720_S_NODE_3832_length_326_cov_1.169960_g3804_i0 PRJNA982720 3832 326 1.1699600000000001 3.8140696 Helicobacter pylori 210 Bacteria Bacteria 49.3 1.71e-5   NR GAA9260229.1 210 g3804 i0 64.9 0.340490797546012 37 13 34 0 162 272 1 37 GAA9260229.1 hypothetical protein Kyoto199A_4440 [Helicobacter pylori] diamond 111 49.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31194964 31194964 PRJNA982720_S_NODE_8415_length_255_cov_1.159341_g8387_i0 PRJNA982720 8415 255 1.159341 2.95631955 Helicobacter pylori 210 Bacteria Bacteria 52 8.31e-6   NR GAA9038119.1 210 g8387 i0 66.7 0.847058823529412 36 12 42.4 0 32 139 1 36 GAA9038119.1 hypothetical protein Kyoto184A_01030 [Helicobacter pylori] diamond 216 52 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31226859 31226859 PRJNA982720_S_NODE_9655_length_243_cov_0.858824_g9627_i0 PRJNA982720 9655 243 0.858824 2.08694232 Helicobacter pylori 210 Bacteria Bacteria 80.5 4.27e-17   NR GAA8684133.1 210 g9627 i0 53.8 1.97530864197531 80 37 98.8 0 242 3 32 111 GAA8684133.1 hypothetical protein Kyoto145A_0980 [Helicobacter pylori] diamond 480 80.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31258613 31258613 PRJNA982720_S_NODE_5415_length_297_cov_0.924107_g5387_i0 PRJNA982720 5415 297 0.924107 2.74459779 Helicobacter pylori 210 Bacteria Bacteria 48.9 2.31e-5   NR GAA9126255.1 210 g5387 i0 77.1 0.353535353535354 35 8 35.4 0 150 254 20 54 GAA9126255.1 hypothetical protein Kyoto190A_1160 [Helicobacter pylori] diamond 105 48.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31796127 31796127 PRJNA982720_S_NODE_5917_length_289_cov_0.740741_g5889_i0 PRJNA982720 5917 289 0.740741 2.14074149 Helicobacter pylori 210 Bacteria Bacteria 53.1 4.89e-7   NR GAA9255403.1 210 g5889 i0 49.1 0.570934256055363 55 27 57.1 1 42 206 1 54 GAA9255403.1 hypothetical protein Kyoto199A_3310 [Helicobacter pylori] diamond 165 53.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32429198 32429198 PRJNA982720_S_NODE_7919_length_261_cov_1.095745_g7891_i0 PRJNA982720 7919 261 1.095745 2.85989445 Helicobacter pylori 210 Bacteria Bacteria 66.2 2.13e-12   NR GAA9125607.1 210 g7891 i0 73.8 0.482758620689655 42 11 48.3 0 7 132 8 49 GAA9125607.1 hypothetical protein Kyoto190A_0930 [Helicobacter pylori] diamond 126 66.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;