RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA982720" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA982720 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27374328 27374328 PRJNA982720_S_NODE_7783_length_262_cov_3.656085_g7755_i0 PRJNA982720 7783 262 3.656085 9.5789427 Staphylococcus aureus 1280 Bacteria Bacteria 43.5 0.0134   NR WP_178137620.1 1280 g7755 i0 51.8 0.950381679389313 83 25 85.9 4 13 237 9 84 WP_178137620.1 hypothetical protein, partial [Staphylococcus aureus] diamond 249 43.5 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
28321187 28321187 PRJNA982720_S_NODE_2726_length_352_cov_2.741935_g2698_i0 PRJNA982720 2726 352 2.741935 9.6516112 Staphylococcus aureus 1280 Bacteria Bacteria 46.2 0.0018600000000000001   NR WP_178137632.1 1280 g2698 i0 51.4 0.911931818181818 107 35 85.2 6 2 301 4 100 WP_178137632.1 hypothetical protein, partial [Staphylococcus aureus] diamond 321 46.2 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
30753055 30753055 PRJNA982720_S_NODE_4574_length_311_cov_3.310924_g4546_i0 PRJNA982720 4574 311 3.310924 10.29697364 Streptococcus pyogenes 1314 Bacteria Bacteria 43.5 0.0356   NR TYK79840.1 1314 g4546 i0 48.4 0.916398713826367 95 39 87.8 4 304 32 68 156 TYK79840.1 hypothetical protein E0F50_09685, partial [Streptococcus pyogenes] diamond 285 43.5 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;