contig_metadata
13 rows where bioproject = "PRJNA982106" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2546526 | 2546526 | PRJNA982106_P_NODE_10902_length_318_cov_0.742857_g10662_i0 | PRJNA982106 | 10902 | 318 | 0.742857 | 2.36228526 | Bacteria | 2 | Bacteria | Bacteria | 566 | 8.609999999999999e-157 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g10662 | i0 | 98.742 | 101.006289308176 | 318 | 4 | 100 | 0 | 1 | 318 | 319489 | 319806 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 32120 | 566 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 6067407 | 6067407 | PRJNA982106_P_NODE_8965_length_339_cov_0.812030_g8725_i0 | PRJNA982106 | 8965 | 339 | 0.81203 | 2.7527817 | Treponema sp. canine oral taxon 358 | 1151573 | Bacteria | Bacteria | 621 | 1.95e-173 | NTclustered | gi|373279860|gb|JN713528.1| | 1151573 | g8725 | i0 | 99.705 | 99.3421828908555 | 339 | 1 | 100 | 0 | 1 | 339 | 919 | 581 | Treponema sp. canine oral taxon 358 clone 1Z002 16S ribosomal RNA gene, partial sequence | blastn | 33677 | 621 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. canine oral taxon 358 | ||
| 7649196 | 7649196 | PRJNA982106_P_NODE_3286_length_486_cov_1.314770_g3047_i0 | PRJNA982106 | 3286 | 486 | 1.31477 | 6.3897822 | root | 1 | Root_unresolved | Root_unresolved | 893 | 0 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g3047 | i0 | 99.794 | 147.09670781893 | 486 | 1 | 100 | 0 | 1 | 486 | 312637 | 313122 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 71489 | 893 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 7649259 | 7649259 | PRJNA982106_P_NODE_7646_length_356_cov_1.360424_g7406_i0 | PRJNA982106 | 7646 | 356 | 1.360424 | 4.84310944 | Treponema | 157 | Bacteria | Bacteria | 501 | 2.779999999999999e-137 | NTclustered | gi|1996291085|gb|CP027017.1| | 58231 | g7406 | i0 | 91.967 | 3.04213483146067 | 361 | 23 | 99 | 1 | 1 | 355 | 2643297 | 2643657 | Treponema medium strain T19 chromosome, complete genome | blastn | 1083 | 501 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 8923904 | 8923904 | PRJNA982106_P_NODE_22587_length_249_cov_1.693182_g22347_i0 | PRJNA982106 | 22587 | 249 | 1.693182 | 4.21602318 | Treponema | 157 | Bacteria | Bacteria | 416 | 6.939999999999999e-112 | NTclustered | gi|2265136109|gb|CP051197.1| | 69710 | g22347 | i0 | 96.8 | 197.473895582329 | 250 | 7 | 100 | 1 | 1 | 249 | 325255 | 325504 | Treponema vincentii strain OMZ 802 chromosome, complete genome | blastn | 49171 | 416 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 12443044 | 12443044 | PRJNA982106_P_NODE_26970_length_246_cov_0.890173_g26730_i0 | PRJNA982106 | 26970 | 246 | 0.890173 | 2.18982558 | Bacteria | 2 | Bacteria | Bacteria | 149 | 4.35e-44 | NR | HKM06771.1 | 1972642 | g26730 | i0 | 86.6 | 12 | 82 | 11 | 100 | 0 | 1 | 246 | 80 | 161 | HKM06771.1 ABC transporter ATP-binding protein [Sphaerochaeta sp.] | diamond | 2952 | 149 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaeta | Sphaerochaeta sp. | ||
| 16573457 | 16573457 | PRJNA982106_P_NODE_13833_length_292_cov_1.406393_g13593_i0 | PRJNA982106 | 13833 | 292 | 1.406393 | 4.10666756 | Bacteria | 2 | Bacteria | Bacteria | 540 | 4.74e-149 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g13593 | i0 | 100 | 68.4931506849315 | 292 | 0 | 100 | 0 | 1 | 292 | 319040 | 318749 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 20000 | 540 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 17848620 | 17848620 | PRJNA982106_P_NODE_20094_length_252_cov_1.564246_g19854_i0 | PRJNA982106 | 20094 | 252 | 1.564246 | 3.94189992 | Bacteria | 2 | Bacteria | Bacteria | 460 | 3.2e-125 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g19854 | i0 | 99.603 | 115.861111111111 | 252 | 1 | 100 | 0 | 1 | 252 | 317982 | 317731 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 29197 | 460 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 19122208 | 19122208 | PRJNA982106_P_NODE_11275_length_314_cov_0.950207_g11035_i0 | PRJNA982106 | 11275 | 314 | 0.950207 | 2.98364998 | Bacteria | 2 | Bacteria | Bacteria | 534 | 2.39e-147 | NTclustered | gi|404429427|emb|HE793032.1| | 1161918 | g11035 | i0 | 98.361 | 147.324840764331 | 305 | 4 | 97 | 1 | 1 | 305 | 1131213 | 1130910 | Brachyspira pilosicoli WesB complete genome | blastn | 46260 | 534 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira pilosicoli | ||
| 22640802 | 22640802 | PRJNA982106_P_NODE_16898_length_272_cov_1.195980_g16658_i0 | PRJNA982106 | 16898 | 272 | 1.19598 | 3.2530656 | Treponema sp. OMZ 305 | 1659192 | Bacteria | Bacteria | 472 | 1.62e-128 | NTclustered | gi|2265133351|gb|CP051300.1| | 1659192 | g16658 | i0 | 97.81 | 192.242647058824 | 274 | 4 | 100 | 1 | 1 | 272 | 210654 | 210927 | Treponema sp. OMZ 305 chromosome, complete genome | blastn | 52290 | 472 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 305 | ||
| 22948766 | 22948766 | PRJNA982106_P_NODE_19778_length_254_cov_2.464088_g19538_i0 | PRJNA982106 | 19778 | 254 | 2.464088 | 6.25878352 | root | 1 | Root_unresolved | Root_unresolved | 470 | 5.37e-128 | NTclustered | gi|1318779104|gb|CP019600.1| | 159 | g19538 | i0 | 100 | 128.98031496063 | 254 | 0 | 100 | 0 | 1 | 254 | 2036855 | 2036602 | Brachyspira hyodysenteriae strain BH718 chromosome, complete genome | blastn | 32761 | 470 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira hyodysenteriae | ||
| 22948840 | 22948840 | PRJNA982106_P_NODE_25458_length_247_cov_0.885057_g25218_i0 | PRJNA982106 | 25458 | 247 | 0.885057 | 2.18609079 | Bacteria | 2 | Bacteria | Bacteria | 457 | 4.05e-124 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g25218 | i0 | 100 | 81.6356275303644 | 247 | 0 | 100 | 0 | 1 | 247 | 321918 | 322164 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 20164 | 457 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 25497344 | 25497344 | PRJNA982106_P_NODE_13340_length_296_cov_1.269058_g13100_i0 | PRJNA982106 | 13340 | 296 | 1.269058 | 3.75641168 | Bacteria | 2 | Bacteria | Bacteria | 542 | 1.34e-149 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g13100 | i0 | 99.662 | 99.1452702702703 | 296 | 1 | 100 | 0 | 1 | 296 | 321845 | 321550 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 29347 | 542 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;